Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03546 ATGTCTTCCATTATTTTTATTATTCTTCATTTATTTCTGCAGCTGAGTTGTTTCCGAGTTAACTCGGAGCCGACTCAGGACAAGCAAGCCCTCCTTGCTTTTATTTCACAAACACCACACTCTAACCGTGTTCAATGGAACGCTTCAGATTCCGTTTGTAACTGGGTCGGTGTTCAATGCGACGCTTCAAGTTCCTATGTTTATTCACTCCGTTTACCCGCCGTTGGACTTGTGGGCCGGGTCCCACCTGACACAATCGGAAGGTTAACGAATCTACGTATTCTCAGTCTCCGTTCTAATGGTCTCTCCGGCGAGATCCCTTCCGATTTCTCTAATTTGACTTTTCTTCGTAGTATATATCTTCAGAAGAATAAATTCTCCGGTGGGTTTCCGTCTAGTTTAACTCGGTTAACTCGCTTGACTCGCTTGGATCTCTCTTCCAACAACTTTTCCGGCTCAATTCCTTTCTCTATCAACAACTTGACTCACCTCAGTGGTCTGTTCTTGGAGAATAACACGTTCTCCGGTAGTCTTCCAAGCGTCACTGCAAATTTGAACGGCTTTGATGTTTCTAATAACAATCTCAACGGTTCAATCCCCAAGACGCTGTCGAAGTTCCCTGAATCTTCGTTCGCCGGAAACATTAATCTCTGCGGTCCACCATTAAAATCGTGCAGCCCATTTTTTCCTGCGCCGGCGCCGTCACCGGGTTTGATTCCACCGGTGATTAAACCGGGGAAGAAATCTAAGAAGCTTTCAACAGGCGCCATTGTCGCAATTGTAGTTGGTTCAGTTCTTTTCATAGCGTTACTGCTTCTACTCTTATTACTCTGTCTCCGGAAACGTCGCCGGCAACCAGCGAAACCACCAAAGCCAGTTGTCGCGGCGGCTCGTTCCGCGCCTGCCGAAGCCGGCACATCGTCTTCCAAAGACGACATAACCGGCGGTTCTGCAGAAGCAGAGAGGAACAAATTGGTGTTCTTTGACGGAGGAATATACAGTTTCGATTTGGAGGATTTGCTTAGGGCTTCTGCGGAGGTTTTGGGAAAGGGAAGCGTTGGGACTTCGTATAAAGCGGTGTTGGAAGAAGGAACTACGGTGGTTGTTAAGAGGTTGAAGGATGTTGTTGTAACAAAGAAAGAGTTTGAGATGCAAATGGAAATTCTGGGTAAAATTAAGCATGAGAATGTGGTTCCTCTTAGAGCATTTTACTTTTCCAAAGATGAGAAATTGCTTGTTTATGATTACATGCCCGCCGGTAGCTTATCTGCTCTACTTCACGGAAGCAGAGGATCTGGGCGAACACCGTTAGATTGGGACAACCGAATGAGAATAGCCCTTGGAGCATCAAGAGGACTAGCATGCCTCCACGTGTCCGGCAAGGTAGTCCACGGCAACATTAAATCCTCCAACATCCTCCTCCGAGGACCCGGCAATGACGCAAGCGTTTCAGATTTTGGTCTCAACCCGTTATTCGGAAACGGATCTCCATCAAGCCGGGTGGCGGGTTACCGTGCACCCGAAACCCTAGAAACCCGAAAAGTCACCTTCAAATCTGACGTATACAGCTTCGGCGTATTGCTGTTGGAGCTATTAACAGGAAAAGCACCCAATCAAGCTTCACTAGGTGAAGAGGGAATCGATCTACCGAGGTGGGTCCAATCCGTTGTTCGTGAAGAATGGACCGCAGAGGTTTTTGACGCTGAGCTCATGAGGTTTCATAATATCGAAGAAGAGATGGTTCAGTTGTTGCAGATAGCGATGGCTTGTGTTTCTGTGGTGCCTGATCAGAGACCAAGTATGCAAGACGTGGTGCGCATGATAGAGGATATGAATCGCGGGGAGACTGATGAGGCTCTTCGTCAGTCGTCCGATGATCCTTCGAAAGGATCCGAGGGTCATACTCCACCTCAGACAAGGACTCCACCTAGATCGCGCACACCGTAG 1947 0.4777 MSSIIFIILHLFLQLSCFRVNSEPTQDKQALLAFISQTPHSNRVQWNASDSVCNWVGVQCDASSSYVYSLRLPAVGLVGRVPPDTIGRLTNLRILSLRSNGLSGEIPSDFSNLTFLRSIYLQKNKFSGGFPSSLTRLTRLTRLDLSSNNFSGSIPFSINNLTHLSGLFLENNTFSGSLPSVTANLNGFDVSNNNLNGSIPKTLSKFPESSFAGNINLCGPPLKSCSPFFPAPAPSPGLIPPVIKPGKKSKKLSTGAIVAIVVGSVLFIALLLLLLLLCLRKRRRQPAKPPKPVVAAARSAPAEAGTSSSKDDITGGSAEAERNKLVFFDGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYMPAGSLSALLHGSRGSGRTPLDWDNRMRIALGASRGLACLHVSGKVVHGNIKSSNILLRGPGNDASVSDFGLNPLFGNGSPSSRVAGYRAPETLETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPSMQDVVRMIEDMNRGETDEALRQSSDDPSKGSEGHTPPQTRTPPRSRTP 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03546 648 CDD STKc_IRAK 348 611 - -
Vifa4g03546 648 PANTHER OS05G0588300 PROTEIN 6 621 - -
Vifa4g03546 648 Gene3D Ribonuclease Inhibitor 185 226 IPR032675 -
Vifa4g03546 648 FunFam pollen receptor-like kinase 1 311 416 - -
Vifa4g03546 648 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 417 622 - -
Vifa4g03546 648 SUPERFAMILY Protein kinase-like (PK-like) 346 608 IPR011009 -
Vifa4g03546 648 Gene3D Phosphorylase Kinase; domain 1 310 416 - -
Vifa4g03546 648 Gene3D Transferase(Phosphotransferase) domain 1 417 631 - -
Vifa4g03546 648 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Vifa4g03546 648 ProSiteProfiles Protein kinase domain profile. 342 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03546 648 MobiDBLite consensus disorder prediction 610 628 - -
Vifa4g03546 648 MobiDBLite consensus disorder prediction 610 648 - -
Vifa4g03546 648 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Vifa4g03546 648 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Vifa4g03546 648 SUPERFAMILY L domain-like 26 221 - -
Vifa4g03546 648 Pfam Protein kinase domain 345 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03546 648 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03546 Vifa-Chr4 1113626303 1113629512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03546 17 629 Receptor kinase-like Gene Family AT5G58300 53.537 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa4g03546 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03546 - - gmx:100806857 984.941