Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03544 ATGTCTCAATCCAAATGTGATGAAACTGATAAAATGTTAGATGCTTATATCTACGATTACCTCGTGAAGAATCAATTGTATGAAACTGCGAGATTTTTTCACGACGAAGCTGCGGTTGTTCCCAATGTTGTTAGGTATGCACCTGATGGTTTTCTCTTTGAGTGGTGGTCTGTTTTTTGGGAGTTATTTATGGCTAAGAGAGGTCTGTCACACTCAGAATCAGCGGTGTCTTACCTTAAGGCTCAGGGAACGCGGAAGCAAGAAGAGAAAAGGAGAGTCCTGTTCGTATCACGTAGACCTGCTCAGAAGCAGCAATATGGGGCTGAAGCTCAAGTTTTTAATCACAATGTTCTCTGTCCCATAAACAATGGTCCTTTGGTGAGGCAGAACCAGGTAACTTCCAATGCAACAAAACGAAATAGGGACATGTTGAAGCCTCCCCTCCATGGAAACACTTTAGATGGCATGAGAATTAAGAAAATGAAAACTAATAACACTGGTCAGATTCCGATCAAGCATTGTGCCTTGTTTAACACTATAACAGCAATGTCTGCCAGACAGACTTCAAGACAAACATTCCGCAGTGCATTTAGCATTTTAAAAGAGAATCTTCAACAAGATCTAAATCAGAACCAGCAACTTCCAGGGTCTATACAAGGCATGGCCAGTAATATGAGTCCAATGAAGGGGCCCCGCACATTTATCTATATTAATCATGGTGGGGGCAATTTAACACGGAAAAGGCGGCCTTTAGCAGGTCTGGATCAGCTCCACTCAGAACTTCTCCAGGAGGATAATTTGACGTTGTGTTCACAATCTTCCGATCAATTTTCACCACAGCAGCAACTTATGCTTCAGGCACAACAGGATTTGGTTAATCTGTTTCTCTGTGGTTTTGTTGGCAAAAGACTAAGGGTGCTTCTAAATAATCAAAATATTGTTCCAGGGAAAGATGGCCAATCAAATTATGTTGCTGATTCAATTCCCAATATTGTAACACCTGCACCAATTGGTTTCTCTCAATTGCCTTATCTTGCCAATATCTCTGGAACTGCAAACACAACAGGACAGTCTTTTCGTTCACAACCATCAACGCATACACCACTGCCAACTTGGCAACAGTATGATTTGAGCTCACCTGCGTCAACACAGACTCAATTGGATGATATGGATCATCACAAGAGTGATATATCTGTGGGTGACAATTTTGAGGCATTATCATCCCTTGCTGATGCAGACCAAAAAGGACAAGTTGACAAAGGATTCTCATTTATGGAGATCAAGCATGGAATGGCTAGTTCACATAAAGTTAATTGTTGTCACTTCTCCTTGGATGGAAAACTACTTGTTACGGGTGGTCATGATAACAAGGCTTCTCTTTGGTGCACAGAATCGTTTAACCTGAAATCTACATTTCACGGGCACACTAAATGGATAACTGATGTTAGATTTTCCCCAAGCATGTTGTTTGTCGCTACGTCCTCAGCTGACAAAACTGTAAAGGTTTGGAGTGTTAATAATCCTACTCATTCTATTCGGACATTTACGGGGCATACAAGAACTGTGATGTCACTAGACTTTCACCCAAATAAAGATGACCTTATTTGCTCTTGTGATAAAAGGGAAATAAGATATTGGAGTATTGAAAATGGTAGTTGTGTTGGGGTTTTTGAGGGTGGTGCAACTCAGGTGAGATTTCAACCTGGTTTGGGAAAGCTTCTTGCAGCAGCAGTAAATAATCTAATACTCATTCTTGACGCAGAAACTCTGAGTTGCAGAATTAAATTGGAGGGCCACAATAGCATTGTTCATTCTGTGTGCTGGCACTCGTCTGGCAGATATCTGGCCTCTGTTAGTGATGATCTCGTGAGAATCTGGGACATTGGAGCCAATGACAGTGAGGTGTGTATTCATGAACTGAATACAGCTGGGTCTGATGACAAATTCAAGAGCTGTGTTTTTCATCCCATTTATCATGTTCTGGTCCTTAGCCGCGACAAGACTCTTATGCTGTGGGATTATATAGCGAGAAATGTAATGTTTCTGCGTGGACACGACAAGCTTGTATCTGCCTTGGCAGTATCCAATGTTACTGGATTGGTGGCTTCAGTCAGTCACGACCAACATTTCAAAATCTGGATGTGA 2145 0.4163 MSQSKCDETDKMLDAYIYDYLVKNQLYETARFFHDEAAVVPNVVRYAPDGFLFEWWSVFWELFMAKRGLSHSESAVSYLKAQGTRKQEEKRRVLFVSRRPAQKQQYGAEAQVFNHNVLCPINNGPLVRQNQVTSNATKRNRDMLKPPLHGNTLDGMRIKKMKTNNTGQIPIKHCALFNTITAMSARQTSRQTFRSAFSILKENLQQDLNQNQQLPGSIQGMASNMSPMKGPRTFIYINHGGGNLTRKRRPLAGLDQLHSELLQEDNLTLCSQSSDQFSPQQQLMLQAQQDLVNLFLCGFVGKRLRVLLNNQNIVPGKDGQSNYVADSIPNIVTPAPIGFSQLPYLANISGTANTTGQSFRSQPSTHTPLPTWQQYDLSSPASTQTQLDDMDHHKSDISVGDNFEALSSLADADQKGQVDKGFSFMEIKHGMASSHKVNCCHFSLDGKLLVTGGHDNKASLWCTESFNLKSTFHGHTKWITDVRFSPSMLFVATSSADKTVKVWSVNNPTHSIRTFTGHTRTVMSLDFHPNKDDLICSCDKREIRYWSIENGSCVGVFEGGATQVRFQPGLGKLLAAAVNNLILILDAETLSCRIKLEGHNSIVHSVCWHSSGRYLASVSDDLVRIWDIGANDSEVCIHELNTAGSDDKFKSCVFHPIYHVLVLSRDKTLMLWDYIARNVMFLRGHDKLVSALAVSNVTGLVASVSHDQHFKIWM 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03544 714 Gene3D - 381 562 IPR015943 GO:0005515
Vifa4g03544 714 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Vifa4g03544 714 SUPERFAMILY WD40 repeat-like 430 713 IPR036322 GO:0005515
Vifa4g03544 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 472 507 - -
Vifa4g03544 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 472 513 IPR001680 GO:0005515
Vifa4g03544 714 Pfam LisH 11 37 IPR006594 GO:0005515
Vifa4g03544 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 682 714 - -
Vifa4g03544 714 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 8 713 IPR044716 GO:0003714
Vifa4g03544 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 596 628 - -
Vifa4g03544 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 596 628 IPR001680 GO:0005515
Vifa4g03544 714 Pfam WD domain, G-beta repeat 434 461 IPR001680 GO:0005515
Vifa4g03544 714 Pfam WD domain, G-beta repeat 512 547 IPR001680 GO:0005515
Vifa4g03544 714 Pfam WD domain, G-beta repeat 468 504 IPR001680 GO:0005515
Vifa4g03544 714 Pfam WD domain, G-beta repeat 592 627 IPR001680 GO:0005515
Vifa4g03544 714 Pfam WD domain, G-beta repeat 678 713 IPR001680 GO:0005515
Vifa4g03544 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 556 IPR001680 GO:0005515
Vifa4g03544 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 682 714 IPR001680 GO:0005515
Vifa4g03544 714 CDD WD40 434 713 - -
Vifa4g03544 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 552 - -
Vifa4g03544 714 Gene3D - 563 714 IPR015943 GO:0005515
Vifa4g03544 714 SMART WD40_4 589 627 IPR001680 GO:0005515
Vifa4g03544 714 SMART WD40_4 423 462 IPR001680 GO:0005515
Vifa4g03544 714 SMART WD40_4 633 673 IPR001680 GO:0005515
Vifa4g03544 714 SMART WD40_4 550 586 IPR001680 GO:0005515
Vifa4g03544 714 SMART WD40_4 465 504 IPR001680 GO:0005515
Vifa4g03544 714 SMART WD40_4 675 714 IPR001680 GO:0005515
Vifa4g03544 714 SMART WD40_4 508 547 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03544 Vifa-Chr4 1112703946 1112710587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03544 431 628 Miscellaneous Gene Families AT5G08390 27.586 4.13e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa4g03544 WD40 0.078 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03544 - - mtr:11440246 848.58