Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03525 ATGTCATCAAGTGGAACAATTTGGAGCTATGAAGAAGAAAAGGCATTTGAGAATGCCATAGCCATGCATTGGATTGAAAAACAAGATTCAAAAGAACAAGAATGGGAAAAGATTGCTTCATGTGTCCCTGACAAAAGCATGGAAGAAGTGAAACAACATTATCAAGTGTTGGTAGATGATGTTAGTGCAATTGAGGCAGGTCATGTTTCATTTCCTAATTATCCTAATGAATTGGAAAGTAGTTCAAATAAAGATTCTTCTAAGTCCACCACAAGTTTGGATAAGAGATCAAGTTGTCATTTTGGTAGTGGGTTTTCTGGTTTGGGACATGACTCCTCCACCCACCATAGTAGTGGTAAAGGTGGATTGTCAAAGTCTTCATCATCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAGGCTATTTTTACTTGGTTTAGACAAATTTGGAAAAGGAGATTGGAGGAGTATTTCAAGGAACTTTGTGATATCAAGGACTCCAACACAAGTGGCAAGTCATGCACAAAAGTATTTCATAAGGTTGAATTCAATCAATAGAGATAGAAGAAGGTCTAGTATTCATGATATTACGAGTATTAACAATGGAGATGTAGCTAGTAATCATCAAGCACCAATAACAGGTCAACATGGTAACACAATTCCTTCAAATGCAATGAGTTTAGGACAATCAATGAAGCATAGAGTTCATCCTCATCATCCTGGTGCTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTGTTGTTGCTCCTCCTGCTCATATGGCTTCTGCAGTTGGGACTCCGGTTATGCTTCCTCATCATCCTCATCACCATCCACCTTATGCTGTTCCTCTAGCTTACCCTATGGCACCTCCACCAATGCACCAATAA 912 0.3936 MSSSGTIWSYEEEKAFENAIAMHWIEKQDSKEQEWEKIASCVPDKSMEEVKQHYQVLVDDVSAIEAGHVSFPNYPNELESSSNKDSSKSTTSLDKRSSCHFGSGFSGLGHDSSTHHSSGKGGLSKSSSSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSINRDRRRSSIHDITSINNGDVASNHQAPITGQHGNTIPSNAMSLGQSMKHRVHPHHPGAGLGMYGAPVGHPVVAPPAHMASAVGTPVMLPHHPHHHPPYAVPLAYPMAPPPMHQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03525 303 MobiDBLite consensus disorder prediction 72 95 - -
Vifa4g03525 303 SUPERFAMILY Homeodomain-like 134 189 IPR009057 -
Vifa4g03525 303 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
Vifa4g03525 303 CDD SANT 8 58 IPR001005 -
Vifa4g03525 303 MobiDBLite consensus disorder prediction 74 95 - -
Vifa4g03525 303 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
Vifa4g03525 303 FunFam transcription factor MYB1R1 138 189 - -
Vifa4g03525 303 FunFam Transcription factor SRM1 1 71 - -
Vifa4g03525 303 CDD SANT 139 184 IPR001005 -
Vifa4g03525 303 Gene3D - 138 191 - -
Vifa4g03525 303 MobiDBLite consensus disorder prediction 110 128 - -
Vifa4g03525 303 SMART sant 136 186 IPR001005 -
Vifa4g03525 303 SMART sant 4 60 IPR001005 -
Vifa4g03525 303 MobiDBLite consensus disorder prediction 110 138 - -
Vifa4g03525 303 Gene3D - 1 71 - -
Vifa4g03525 303 PANTHER TRANSCRIPTION FACTOR KUA1 4 291 - -
Vifa4g03525 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 136 186 IPR006447 GO:0003677
Vifa4g03525 303 Pfam Myb-like DNA-binding domain 8 57 IPR001005 -
Vifa4g03525 303 Pfam Myb-like DNA-binding domain 139 184 IPR001005 -
Vifa4g03525 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Vifa4g03525 303 ProSiteProfiles Myb-like domain profile. 8 58 IPR001005 -
Vifa4g03525 303 SUPERFAMILY Homeodomain-like 8 64 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03525 Vifa-Chr4 1106001515 1106002600 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g03525 Myb_DNA-binding 2.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03525 - - gmx:778049 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03525 4 1106001515 1106002600 Vifa4g03525 4 1106001515 1106002600 ECH