Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03524 ATGAGCTGGAGTAGGGTGTTGAAATCAGCGCAGGCTCTCGCCGCTCACACTTTTCTTCTCTCTTTCACTCTCTTGCTGCTTCTCAAGCTTGATCATCACATCTCTTCCTCTTGGTGGATGATATTTTTACCTCTTTGGATGTTTCATGCCGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCACCCTCAGCTCCGCGTAATCGACATTGGGCGCCGTGTCATGCCGTTGTTGCAACGCCATTGCTTATTGCGTTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCGTGGCTTTGCAGCAGTAGATCTGAAGATTGTGTTCCTTCCTTTATTAACATTTGAAGTCATTATTCTCGTTGACAATTTCAGAATGTGTAGAGCTCTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCCATCTCTATGGTTTTCTTCATTACTGCTACAGTCTTCACACTCCTAAAACTGAATGGTAGTGTAGCTTCTCTTGGTTGGTGGGACTTATTTATTAACTTCAGTATTGCCGAGTGCTTTGCGTTTCTTGTATGTACAAAGTGGCTGAATCCTGTCATTCATAGAAGTCCCAGAGAACCGAGTTCTTCTTCTACTACTACTACTACTACTACAATTAGACATCTTGACAGGAACAGTGGTTTACTGGTTTCATCGGAAGGAGATCAACGGCAGGCGAGAATATGTAGCCTGCAAGACATAGGTGGTCATTTCATGAAAGTGCCTATTATTGTATTTCAGGTTCTTCTTTGCATGCATTTAGAGGGAACGACTGCATTTGCTGCACAATTATCTCTTGCAGTTCTTTTTTGTCCTCTTTTCGTACTGCAAGGTGTTGGCGTGCTGTTATCTGCGTCTAAATTTGTGGAGAAACTTGTGCTTCTTCTACGAAGCGGAGCTGGTGGAGGACTTTATTTTAGATTCTCTTCAAGAGCTCACGATTGTTTGGGGTTCTTACACCATGGTTCTAGATTATTAGGCTGGTGGTCAATTGATGAAGGAAGTCGGGAAGAACAGGCCCGATTGTACCATGAGGGAGCATCTGGGTATAATACATTCAACGGTTACCCTCCCGATATTGTTAAGAAAATGCCTAAGAGGGATCTTGCCGAGGAGGTGTGGAGACTCCAGGCTGCTCTTGGCGAGCAGACGGAAATTACAAAATACAGCCAACAGGAATATGAAAGACTTAAAAATGAGAAAGTGCTGTGCCGAATTTGTTTCGAAGGAGAAATTACTGTTGTATTGCTCCCATGTAGGCACCGCGTCCTTTGCAACTCATGTTCAGCGAAGTGTAAGATGTGCCCAATGTGCCGCAACTATATCGAAGAGCGCTTGCCCGTATATGATGTCTAG 1413 0.4374 MSWSRVLKSAQALAAHTFLLSFTLLLLLKLDHHISSSWWMIFLPLWMFHAVVARGRFSLPAPSAPRNRHWAPCHAVVATPLLIAFELLLCIYLESLYVRGFAAVDLKIVFLPLLTFEVIILVDNFRMCRALMPGDEESMSDEAIWETLPHFWVAISMVFFITATVFTLLKLNGSVASLGWWDLFINFSIAECFAFLVCTKWLNPVIHRSPREPSSSSTTTTTTTIRHLDRNSGLLVSSEGDQRQARICSLQDIGGHFMKVPIIVFQVLLCMHLEGTTAFAAQLSLAVLFCPLFVLQGVGVLLSASKFVEKLVLLLRSGAGGGLYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFNGYPPDIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEITVVLLPCRHRVLCNSCSAKCKMCPMCRNYIEERLPVYDV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03524 470 SMART ring_2 423 457 IPR001841 -
Vifa4g03524 470 SUPERFAMILY RING/U-box 415 465 - -
Vifa4g03524 470 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 470 - -
Vifa4g03524 470 ProSiteProfiles Zinc finger RING-type profile. 423 458 IPR001841 -
Vifa4g03524 470 FunFam Kinesin-like protein KIN-7D, mitochondrial 400 468 - -
Vifa4g03524 470 Pfam Zinc finger, C3HC4 type (RING finger) 420 463 - -
Vifa4g03524 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 468 IPR013083 -
Vifa4g03524 470 Pfam Transmembrane Fragile-X-F protein 28 295 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03524 Vifa-Chr4 1104924841 1104928587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03524 1 470 C3H Transcription Factor Family AT1G73950 72.553 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03524 - - tpra:123921257 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03524 4 1104924841 1104928587 Vifa4g03524 4 1104924841 1104928587 ECH