Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03521 ATGTATTCATCAAATAGTTCCCTCAATGGAAATAACCTAACATTTTCCTCTAATTCACCTTTTTGTTCCTTTGAAAGCAACTCAACTTCATCAAAAGATGATCACAACATTCATTCCTCTTTTCCTCTCACTCCTAGTTTCTCTTTCTTTCAATTTCCATATTCTGATCCATTTGAAGACAACCAAATTTTCCTCCAACAGCAACAGCAACAGCAACATGATGTTGATTTTCAGCTTCATCATTCACCTATAGTGATGAATAACAACAATAGTACTACTGATCATCAGGATCAGGCTTCGAAGAATTCGATAACCGACGCCAACAACAATATTGTTAATAGTCTTGCACCTGCAGAAGCTGTTTCTGGTAAAGGAAAAAGTGCAGTGGTTCAGCAGATCCAAAGGAAAAGATCTAGCAAGAGGGATCGACACAGCAAGATAAAGACGGCGAAAGGACTAAGGGATCGGAGAATGAGATTGTCGCTCGAAGTTGCAAAGAGGTTTTTCGGTCTTCAAGATATGTTAGGATTTGAGAAAGCAAGCAAAACTGTGGACTGGTTACTCAACCAATCAAAAGATGGAATCAATCAACTTGCAAGGGAAAAGAATATTCATTTTCCTAGTAAAAGTACATCTTCAACTTCTGAATGTGAAGGAGTTTCAAGCTTGGAATACAATGAAGTTGGAAATCAAGAACAACAAGAAAAAATGGTTATGAAGAAAAGAAGAAAAGGTACTAATAAGGTTTGTAGAAAGAGTGCATTCAATTCCACTGGTAGAGAAATGGCAAGAGAAAGAGCAAGAGAAAGGACAAAAGAAAAAATGGAAGCTAGAACTAGAACATCACTTGTAGCTGATGAATCAAATTCAAAGCAATGCAATGAAGGAAGAACAAAAACTAACCTCACTTGGAACCCCTTTGAAACTGTGGTAGAATCTGCAGGTACACAAACTGTGAATTATCATCCTTCTTTTGATCATGTGAAGCTGATTCATAATGAAGCAGAAGCAGCAGAAAGAACCTCTCAAAAAGCAAAGGAACATCATTCACATTCACATTCACATGAAGATAATTGTTTGTTCAATATGAGCAAATGGAGTCCAACAATGATGTTCAACTCTCTCAACAACTTTCAAGAACATCAATTTGAACAATATCATCAGTCCTTGGAAAAACCTTGGGATGGTTACAACAACCACTTCTAA 1206 0.3682 MYSSNSSLNGNNLTFSSNSPFCSFESNSTSSKDDHNIHSSFPLTPSFSFFQFPYSDPFEDNQIFLQQQQQQQHDVDFQLHHSPIVMNNNNSTTDHQDQASKNSITDANNNIVNSLAPAEAVSGKGKSAVVQQIQRKRSSKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKDGINQLAREKNIHFPSKSTSSTSECEGVSSLEYNEVGNQEQQEKMVMKKRRKGTNKVCRKSAFNSTGREMARERARERTKEKMEARTRTSLVADESNSKQCNEGRTKTNLTWNPFETVVESAGTQTVNYHPSFDHVKLIHNEAEAAERTSQKAKEHHSHSHSHEDNCLFNMSKWSPTMMFNSLNNFQEHQFEQYHQSLEKPWDGYNNHF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03521 401 MobiDBLite consensus disorder prediction 257 297 - -
Vifa4g03521 401 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 95 368 IPR005333 GO:0003700
Vifa4g03521 401 MobiDBLite consensus disorder prediction 282 297 - -
Vifa4g03521 401 ProSiteProfiles R domain profile. 257 274 IPR017888 -
Vifa4g03521 401 ProSiteProfiles TCP domain profile. 140 198 IPR017887 -
Vifa4g03521 401 MobiDBLite consensus disorder prediction 258 281 - -
Vifa4g03521 401 MobiDBLite consensus disorder prediction 338 358 - -
Vifa4g03521 401 Pfam TCP family transcription factor 139 277 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03521 Vifa-Chr4 1103334584 1103335895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03521 136 271 TCP Transcription Factor Family AT3G18550 43.396 9.65e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa4g03521 TCP 1.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03521 - - tpra:123923172 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05333 1 829410999 829413100 Vifa4g03521 4 1103334584 1103335895 ECH
Vifa4g03521 4 1103334584 1103335895 Vifa4g03521 4 1103334584 1103335895 ECH