Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03506 ATGGCCGAACCAGAAAACACCTTTCAATCTTCACATAAGAAGAAGAAGCGCGACAAAAAGAGACTCCGTGATATTGGTGAGGAGCAACACGTAGCAGAAGAAAACGATTTGAACGATACTCGTAGCAATGGAGAATCCTCGAAAAAGAAGAAGAAGATGAAAGAGGAGGTGGAAGTAGAAACTGAAGTAGTGGAAGAGAAAAAAGTTAAGGATAATAGCGGTTCTGGAATTATGAGTACCGAATCATTTGCTTCTCTCGGATTATCTGTACCTACTTCTAAAGCCATTGTGGATATAGGATTTCAACGCATGACTCAGATTCAAGCTGGATCGATTCCGCCACTTTTGAGTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGTAAAACTCTTGCTTTTTTAATTCCTGCTGTGGAACTTTTGTATAAACTTAAGTTTAATCCTCGAAGTGGAGCTGGTGTTGTTGTCATATGTCCCACTAGAGAGCTTGCTATTCAGACCCATGATGTTGCCAAGAAGCTTCTAAAGTATCATTCACAAACTCTTGGATTGATTATTGGAGGTTCAGCTAGAAGAACTGAAGCTGAACACCTTGCTAAAGGGATAAATATATTGGTAGCTACTCCTGGCCGTCTTCTGGATCATCTACAGAATACCAAGCGGTTCGTATATGCTAATCTGAAGTGCCTCATTATTGATGAAGCTGACAGGCTATTGGAAGCAAACTTTGAGGACGAGTTGAAGCAGATTATCAAGCTCCTCCCAAAGAGTAGGCAGACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAAGATCTTGCTCGCCTGTCATTTCAAACTACTCCTGTCTATATTGATGTAGATGATGGAAGAAAGAAGGTCACAAATGAAGGATTGCTACAGGGTTATGTTGTTGTTCCCTGTGCCGAGAGATTTACTGTTCTCTATTCTTTCTTGAAGAGGCACCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCGTGCAACAGTGTCAAATTTCATGCAGACATTTTCAATCACATTAATCTGCATTGTGCAAATATTCATGGAAAACAAAAGCAGCAGACCCGGACAGCTGCTTTCAGAGACTTCTGCGAAGCTGAAAACGGGGTCTTGCTCTGTACTGATGTTGCTGCTCGTGGTTTGGACATACCTTCTGTGGACTGGATTGTGCAGTATGATCCGCCTGATGAGCCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGCAATGCCTTGCTTTTTCTGATTCCTGAGGAATTGCAGTTTCTTCGCTATCTCAAGAAAGCTAAGGTCCCTGTGAAAGAATATGCTTATGATGAAAAGAAAGTGGCTAATATACGGTCTCATCTGGAGAAATTGGTTGCAGAAAATTATTTTTTGAACAAAATGGCTAAGGAAGCATATAGATCATACATATTAGCATATGATTCACATTCCTCCAAGGATATATTCAATGTTCAACGCCTCGATCTGCAGGCTGTTGCAGCTTCGTTCTGTTTTTCAAATCCTCCAAATGTGAGTGTAAACATAAGCAGCAGTAAGCAAAGGAAGAAAACACGGAGAGTTGAGGGAGGCAGACATGGATTCAACCCAAACAATCCTTATGGAAAGCGAAATACTGATGATATGCGGCAGTTTGTGAGGCATTAA 1701 0.4115 MAEPENTFQSSHKKKKRDKKRLRDIGEEQHVAEENDLNDTRSNGESSKKKKKMKEEVEVETEVVEEKKVKDNSGSGIMSTESFASLGLSVPTSKAIVDIGFQRMTQIQAGSIPPLLSGKDVLGAARTGSGKTLAFLIPAVELLYKLKFNPRSGAGVVVICPTRELAIQTHDVAKKLLKYHSQTLGLIIGGSARRTEAEHLAKGINILVATPGRLLDHLQNTKRFVYANLKCLIIDEADRLLEANFEDELKQIIKLLPKSRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRKKVTNEGLLQGYVVVPCAERFTVLYSFLKRHQSKKVMVFFSSCNSVKFHADIFNHINLHCANIHGKQKQQTRTAAFRDFCEAENGVLLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKKAKVPVKEYAYDEKKVANIRSHLEKLVAENYFLNKMAKEAYRSYILAYDSHSSKDIFNVQRLDLQAVAASFCFSNPPNVSVNISSSKQRKKTRRVEGGRHGFNPNNPYGKRNTDDMRQFVRH 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03506 566 CDD DEADc_DDX18 92 289 IPR044773 GO:0003724|GO:0005524
Vifa4g03506 566 SMART ultradead3 100 305 IPR014001 -
Vifa4g03506 566 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 233 241 IPR000629 -
Vifa4g03506 566 SMART helicmild6 341 422 IPR001650 -
Vifa4g03506 566 Gene3D - 25 291 IPR027417 -
Vifa4g03506 566 MobiDBLite consensus disorder prediction 526 566 - -
Vifa4g03506 566 CDD SF2_C_DEAD 302 432 - -
Vifa4g03506 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 444 IPR027417 -
Vifa4g03506 566 SMART DUF4217_3 462 525 IPR025313 -
Vifa4g03506 566 MobiDBLite consensus disorder prediction 1 58 - -
Vifa4g03506 566 MobiDBLite consensus disorder prediction 21 58 - -
Vifa4g03506 566 Gene3D - 300 540 IPR027417 -
Vifa4g03506 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 471 IPR001650 -
Vifa4g03506 566 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Vifa4g03506 566 PANTHER RNA HELICASE 40 472 - -
Vifa4g03506 566 Pfam Domain of unknown function (DUF4217) 463 523 IPR025313 -
Vifa4g03506 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 287 IPR014001 -
Vifa4g03506 566 FunFam RNA helicase 298 528 - -
Vifa4g03506 566 Pfam DEAD/DEAH box helicase 105 276 IPR011545 GO:0003676|GO:0005524
Vifa4g03506 566 Pfam Helicase conserved C-terminal domain 315 421 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03506 Vifa-Chr4 1099280614 1099287290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03506 81 440 Eukaryotic Initiation Factors Gene Family AT3G13920 32.692 8.37e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03506 K13179 - gmx:100798885 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03506 4 1099280614 1099287290 Vifa4g03506 4 1099280614 1099287290 ECH