Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03505 ATGGCCGAACCAGAAAACACCTTTCAATCTTCACATAAGAAGAAGAAGCGCGACAAAAAGAGACTCCGTGATATTGGTGAGGAGCAACACGTAGCAGAAGAAAACGATTTGAACGATACTCGTAGCAATGGAGAATCCTCGAAAAAGAAGAAGAAGATGAAAGAGGAGGTGGAAGTAGAAACTGAAGTAGTGGAAGAGAAAAAAGTTAAGGATAATAGCGGTTCTGGAATTATGAGTACCGAATCATTTGCTTCTCTCGGATTATCTGTACCTACTTCTAAAGCCATTGTGGATATAGGATTTCAACGCATGACTCAGATTCAAGCTGGATCGATTCCGCCACTTTTGAGTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGTAAAACTCTTGCTTTTTTAATTCCTGCTGTGGAACTTTTGTATAAACTTAAGTTTAATCCTCGAAGTGGAGCTGGTGTTGTTGTCATATGTCCCACTAGAGAGCTTGCTATTCAGACCCATGATGTTGCCAAGAAGCTTCTAAAGTATCATTCACAAACTCTTGGATTGATTATTGGAGGTTCAGCTAGAAGAACTGAAGCTGAACACCTTGCTAAAGGGATAAATATATTGGTAGCTACTCCTGGCCGTCTTCTGGATCATCTACAGAATACCAAGCGGTTCGTATATGCTAATCTGAAGTGCCTCATTATTGATGAAGCTGACAGGCTATTGGAAGCAAACTTTGAGGACGAGTTGAAGCAGATTATCAAGCTCCTCCCAAAGAGTAGGCAGACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAAGATCTTGCTCGCCTGTCATTTCAAACTACTCCTGTCTATATTGATGTAGATGATGGAAGAAAGAAGGTCACAAATGAAGGATTGCTACAGGGTTATGTTGTTGTTCCCTGTGCCGAGAGATTTACTGTTCTCTATTCTTTCTTGAAGAGGCACCAATCAAAAAAACAGACCCGGACAGCTGCTTTCAGAGACTTCTGCGAAGCTGAAAACGGGGTCTTGCTCTGTACTGATGTTGCTGCTCGTGGTTTGGACATACCTTCTGTGGACTGGATTGTGCAGTATGATCCGCCTGATGAGCCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGCAATGCCTTGCTTTTTCTGATTCCTGAGGAATTGCAGTTTCTTCGCTATCTCAAGAAAGCTAAGGTCCCTGTGAAAGAATATGCTTATGATGAAAAGAAAGTGGCTAATATACGGTCTCATCTGGAGAAATTGGTTGCAGAAAATTATTTTTTGAACAAAATGGCTAAGGAAGCATATAGATCATACATATTAGCATATGATTCACATTCCTCCAAGGATATATTCAATGTTCAACGCCTCGATCTGCAGGCTGTTGCAGCTTCGTTCTGTTTTTCAAATCCTCCAAATGTGAGTGTAAACATAAGCAGCAGTAAGCAAAGGAAGAAAACACGGAGAGTTGAGGGAGGCAGACATGGATTCAACCCAAACAATCCTTATGGAAAGCGAAATACTGATGATATGCGGCAGTTTGTGAGGCATTAA 1599 0.4153 MAEPENTFQSSHKKKKRDKKRLRDIGEEQHVAEENDLNDTRSNGESSKKKKKMKEEVEVETEVVEEKKVKDNSGSGIMSTESFASLGLSVPTSKAIVDIGFQRMTQIQAGSIPPLLSGKDVLGAARTGSGKTLAFLIPAVELLYKLKFNPRSGAGVVVICPTRELAIQTHDVAKKLLKYHSQTLGLIIGGSARRTEAEHLAKGINILVATPGRLLDHLQNTKRFVYANLKCLIIDEADRLLEANFEDELKQIIKLLPKSRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRKKVTNEGLLQGYVVVPCAERFTVLYSFLKRHQSKKQTRTAAFRDFCEAENGVLLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKKAKVPVKEYAYDEKKVANIRSHLEKLVAENYFLNKMAKEAYRSYILAYDSHSSKDIFNVQRLDLQAVAASFCFSNPPNVSVNISSSKQRKKTRRVEGGRHGFNPNNPYGKRNTDDMRQFVRH 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03505 532 Pfam Domain of unknown function (DUF4217) 429 489 IPR025313 -
Vifa4g03505 532 CDD DEADc_DDX18 92 289 IPR044773 GO:0003724|GO:0005524
Vifa4g03505 532 SMART ultradead3 100 305 IPR014001 -
Vifa4g03505 532 Pfam DEAD/DEAH box helicase 105 276 IPR011545 GO:0003676|GO:0005524
Vifa4g03505 532 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 233 241 IPR000629 -
Vifa4g03505 532 Gene3D - 302 424 IPR027417 -
Vifa4g03505 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 290 IPR027417 -
Vifa4g03505 532 Gene3D - 24 291 IPR027417 -
Vifa4g03505 532 MobiDBLite consensus disorder prediction 1 58 - -
Vifa4g03505 532 MobiDBLite consensus disorder prediction 21 58 - -
Vifa4g03505 532 CDD SF2_C_DEAD 302 398 - -
Vifa4g03505 532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 248 437 IPR001650 -
Vifa4g03505 532 PANTHER RNA HELICASE 40 325 - -
Vifa4g03505 532 Pfam Helicase conserved C-terminal domain 325 387 IPR001650 -
Vifa4g03505 532 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Vifa4g03505 532 SMART DUF4217_3 428 491 IPR025313 -
Vifa4g03505 532 SMART helicmild6 316 388 IPR001650 -
Vifa4g03505 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 431 IPR027417 -
Vifa4g03505 532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 287 IPR014001 -
Vifa4g03505 532 MobiDBLite consensus disorder prediction 492 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03505 Vifa-Chr4 1099280614 1099287290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03505 81 406 Eukaryotic Initiation Factors Gene Family AT3G13920 31.302 4.76e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03505 K13179 - gmx:100798885 798.505