Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03501 ATGGAACCCATGGATATCGTTGGCAAATCAAAGGAAGACGCTTCGCTTCCCAAAGCAACAATGACAAAAATAATTAAAGAGATGTTACCTCCAGATGTACGCGTTGCAAGAGATGCCCAAGACTTATTGATCGAGTGTTGTGTAGAGTTTATAAATCTCATCTCATCAGAGTCCAACGAAGTTTGTAGTAGAGAGGACAAACGGACTATTGCTCCTGAGCACGTATTGAAGGCTCTAAAGGTGCTTGGATTTGGCGACTACATTGAAGAAGTTTATGCAGCATACGAACAACACAAATTGGAGACCATGCAGGATTCCTTAAAAGGCGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAACAACAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAATGGTGAGGCCATTGCTTCTAAGCAGCCAGATGGTGCCAAAGTTTAA 462 0.4329 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALKVLGFGDYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGEAIASKQPDGAKV 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03501 153 FunFam Negative cofactor 2 beta 6 143 - -
Vifa4g03501 153 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982
Vifa4g03501 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Vifa4g03501 153 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Vifa4g03501 153 PANTHER PROTEIN DR1 HOMOLOG 1 150 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03501 Vifa-Chr4 1097895269 1097897402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03501 1 149 CCAAT-DR1 Transcription Factor Family AT5G23090 83.893 3.59e-92 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa4g03501 CBFD_NFYB_HMF 5.5e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03501 K21751 - gmx:100807912 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03501 4 1097895269 1097897402 Vifa4g03501 4 1097895269 1097897402 ECH