Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03500 ATGGAACCCATGGATATCGTTGGCAAATCAAAGGAAGACGCTTCGCTTCCCAAAGCAACAATGACAAAAATAATTAAAGAGATGTTACCTCCAGATGTACGCGTTGCAAGAGATGCCCAAGACTTATTGATCGAGTGTTGTGTAGAGTTTATAAATCTCATCTCATCAGAGTCCAACGAAGTTTGTAGTAGAGAGGACAAACGGACTATTGCTCCTGAGCACGTATTGAAGGCTCTAAAGGTGCTTGGATTTGGCGACTACATTGAAGAAGTTTATGCAGCATACGAACAACACAAATTGGAGACCATGGATTCCTTAAAAGGCGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAACAACAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAATGGTGAGGCCATTGCTTCTAAGCAGCCAGATGGTGCCAAAGTTTAA 459 0.4314 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALKVLGFGDYIEEVYAAYEQHKLETMDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGEAIASKQPDGAKV 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03500 152 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
Vifa4g03500 152 FunFam Negative cofactor 2 beta 6 142 - -
Vifa4g03500 152 PANTHER PROTEIN DR1 HOMOLOG 1 149 IPR044255 -
Vifa4g03500 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Vifa4g03500 152 Gene3D Histone, subunit A 4 144 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03500 Vifa-Chr4 1097895269 1097897402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03500 1 148 CCAAT-DR1 Transcription Factor Family AT5G23090 83.221 1.21e-89 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa4g03500 CBFD_NFYB_HMF 5.5e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03500 K21751 - rcu:8264552 278.87