Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03497 ATGGCTGGTGGAAGGAGAAGGAGGCATCATTTCAGCAAGATCCATGCATTTTCATGTGGTAAAGCATCGTTGGAACAAGATGAACATTCGCTCATAGGAGGACCTGGTTTCTCAAGGAAAGTTTATTGCAATGATGCAGAACGTGCTATGTCTAGTATTTATAGTTATGGTGATAATTACGTTAGAACTACTAAGTATACATTAGCAACTTTTCTACCTAAATCTTTGTTTGAACAATTCAGAAGAGTTGCAAATTTTTACTTCTTGGTTGTTGCTATTCTCTCTTTCTCTCCTGTTGCTCCTTATTCTGCCGTCAGCAATGTTATTCCTCTTCTTGTTGTTGTTGCTGCTACTATGGCCAAAGAGTTCATCGAAGATTTTCAGCGGAAAAAACAGGATATAGAGATGAATAACAGAAAAGTGAAGGTTCATGGTGGTGATGGTGTTTTTGATTATTCTAAATGGAGAGATTTGAGAGTTGGAGATATAGTGAAAGTTGAAAAAGATGAGTATTTTCCTGCTGATCTTATACTTCTTGCATCGAATTACGATGACGCGATTTGCTATGTCGATACCATGAATCTCGACGGAGAGACGAATCTTAAACTAAAACAAGCACTAGAAGGGACTTCGAATTTGTTAGAAGACTCGAGTTTTCGAGATTTCAAGGCTGTGATACGATGCGAGGATCCGAATGCGAATTTGTATTCGTTTGTAGGAAGTTTGGAGGTTGATGAAGAGCATCAGTATCCACTTTCACCTCAGCAGTTACTTCTTAGAGACTCTAAGTTGAAGAACACAGATTTTATCTATGGTGTTGTGATCTTTACCGGTCACGACACGAAGGTTATGCAGAATTCGACAGAGCCTCCTTCGAAGAGAAGCAAGATTGAGAAAAGAATGGATAAGGTTATCTACTGTTTGTTCTTTGTGTTAATTTTGGTTTCTTTCATCGGTTCGATTTTCTTCGGGATATGGACGAAGCAGGATATGAAAAACAAAATAATGAAGAGATGGTACCTTAGGCCTGATGATACTAAGGCTTTCTATGATCCTGATAGTGCAGTAGTTGCGGCGCTTCTTCATTTCTTGACAGCATTGATGTTGTACGGTTACTTTATTCCGATTTCGTTGTATGTTTCTATTGAAGTTGTGAAGGTTCTTCAAAGCATTTTCATCAATCAGGATTTGAACATGTATTACGAGGAAACGGATAAGCCAGCGCACGCTCGTACGTCGAATTTGAACGAAGAACTTGGTCAAGTTGATACCATACTTTCTGATAAAACAGGAACATTGACTTGCAATTCTATGGAATTCATCAAGTGTTCTATTGGTGGAGTTGCTTATGGAAGAGGATTTACGGAAGTCGAGAGAGCTTTATCGAAGAGAAAAGATTCGTATTTCGGGCGGAAGTTGAAAAGCGAAGAAAATGCTACTAAGGCTGCTAAATCAAAGTCGAAGATTAAAGGGTTTAACTTCATGGATGAAAGGATCATGAATGGAAATTGGGTGAGACAACCTAATGCTAATGTGATACAGAATTTCTTAAAGGTTTTGGCTGTATGTCATACCGCAATACCCGAAGTTGATGAAGCAACCGGTAGCATTTCGTACGAAGCTGAATCGCCCGATGAGGCTGCTTTTGTTGTCGCAGCCAGCCAATTCGGATTTGAATTTTATGAAAGAACACATGCAGCTATTTCAGTTCATGAATTGGACCTCGAATCAAATGTGAAATCGGAAAGGTCTTATAATCTTTTAAATGTATTAGAGTTTACTAGTGCGCGAAAGCGAATGTCCGTAATCGTAAGAGACCACACTGGGAAACTACTACTACTTAGCAAAGGTGCTGACAGTGTCATGTTTGAACTACTTGGAAAGAATGGGAGAGAGTTTGAAGAGCAAACTAAGTATCACATTAACGAATACGCGGATTCTGGTTTAAGGACATTGATACTCGCCTATCGTGAACTCGACGAGGAAGAGTACAATCAGTTTAATAAAGAGTTGACAGATGCTAAAAACTTAGTGAGTGCGGATCAAGAGCAGATTGTGGAGGATATATTGCAAAATATTGAGAAGGATTTGATTCTTCTCGGTGCTACCGCAGTCGAGGATAAACTACAAGACGGGGTTCCTGAATGCATTGACAAACTAGCCCAGGCTGGGATTAAGTTATGGGTATTGACTGGTGATAAAATGGAAACTGCAATCAATATTGGATATGCTTGTAGTTTGCTTAGACAAGGAATGAAACAAATTATAATTAATTCAGATACTCCCGAAAACAAATTGCTCGAGAAAATGGAGGACAAATCGGCTTCTGAAGCGGCAATTAAGGCAAGTGTTGTTCGTCAAATAACAGAGGCAAAGGCGTTACTATCGTCATCAGACGATAACTCTGAGGCATTAGCTCTGATCATTGACGGAAAGTCTCTTGCTCATGCATTAGAAGACGATGTAAAAAACTTGTTTCTTGAACTTGCGATTGGATGCGCGTCTGTCATATGCTGTCGTTCGTCTCCAAAGCAAAAAGCACTTGTTACTAGATTGGTTAAAATGAGACCTGGTAGCACAACTCTAGCTATTGGAGATGGAGCAAATGATGTTGGTATGCTACAAGAAGCCGATATTGGAATCGGTATCAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCAAGCGATATCGCCATTGCTCAATTTCGATTTCTAGAACGCTTACTTCTCGTACACGGGCATTGGTGTTACAGAAGAATTTCATCAATGATTTGTTACTTCTTCTACAAGAATATCACTTTCGGCTTCACCTTATTCTTCTACGAGATGTATACCTCATTCTCAGGCCAACCTGCATACAATGATTGGTTCATGTCATTTTACAATGTATTCTTCACTTCACTTCCTGTTATTGCTTTAGGAGTATTTGATCAAGATGTCTCTTCCAAATTATGTCTCAAGTTTCCATTACTCTATCAAGAAGGTGTGCAAAACTTACTATTCAGCTGGAAAAGAATATCCGGTTGGGCGTTAAACGGAGTTGCAAGTTCCGCGATTATATTCTTCTTCTGCATCCGCGCGATGGAGCATCAATCCTTTCGCAAAGGTGGCGAACTTGCTGACTTACAAATTCTTGGAACCACATTGTACACATGTGTTGTATGGGTTGTGAATTGCCAAATGGCATTATCAATAACCTACTTCACATACATACAACATATTTTCATATGGGGAAGCATTTTCATGTGGTACATTTTCCTCATGGCATATGGAGCTATAGACCCTTCAATATCAACAACTGCATATAACGTCTTCATTGAAGCATGTGCACCATCACCGTTATATTGGGTTGTAACTTTTCTTGTTCTTATTGCTGCATTGCTTCCGTATTTCGGGTACTCGACTATTCAACTTCGGTTCTTCCCGGTGTATCATCAAATGATACAATGGATAAGGAAAGATGGGCAGGTGAATGATCCTGAGTTTTGCGACATGGTGAGACAGCGATCAATAAGACATACAACGGTTGGATTTACGGCTCGTTTGGAAGCTTCTAGACGGTTTGAAGCGTCTAGAAGGTCCGAAATATCATTGGTAGCATTGGATGGGAAATCCGGAGAGAATCAATAA 3630 0.397 MAGGRRRRHHFSKIHAFSCGKASLEQDEHSLIGGPGFSRKVYCNDAERAMSSIYSYGDNYVRTTKYTLATFLPKSLFEQFRRVANFYFLVVAILSFSPVAPYSAVSNVIPLLVVVAATMAKEFIEDFQRKKQDIEMNNRKVKVHGGDGVFDYSKWRDLRVGDIVKVEKDEYFPADLILLASNYDDAICYVDTMNLDGETNLKLKQALEGTSNLLEDSSFRDFKAVIRCEDPNANLYSFVGSLEVDEEHQYPLSPQQLLLRDSKLKNTDFIYGVVIFTGHDTKVMQNSTEPPSKRSKIEKRMDKVIYCLFFVLILVSFIGSIFFGIWTKQDMKNKIMKRWYLRPDDTKAFYDPDSAVVAALLHFLTALMLYGYFIPISLYVSIEVVKVLQSIFINQDLNMYYEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIGGVAYGRGFTEVERALSKRKDSYFGRKLKSEENATKAAKSKSKIKGFNFMDERIMNGNWVRQPNANVIQNFLKVLAVCHTAIPEVDEATGSISYEAESPDEAAFVVAASQFGFEFYERTHAAISVHELDLESNVKSERSYNLLNVLEFTSARKRMSVIVRDHTGKLLLLSKGADSVMFELLGKNGREFEEQTKYHINEYADSGLRTLILAYRELDEEEYNQFNKELTDAKNLVSADQEQIVEDILQNIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGYACSLLRQGMKQIIINSDTPENKLLEKMEDKSASEAAIKASVVRQITEAKALLSSSDDNSEALALIIDGKSLAHALEDDVKNLFLELAIGCASVICCRSSPKQKALVTRLVKMRPGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFFYEMYTSFSGQPAYNDWFMSFYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGVQNLLFSWKRISGWALNGVASSAIIFFFCIRAMEHQSFRKGGELADLQILGTTLYTCVVWVVNCQMALSITYFTYIQHIFIWGSIFMWYIFLMAYGAIDPSISTTAYNVFIEACAPSPLYWVVTFLVLIAALLPYFGYSTIQLRFFPVYHQMIQWIRKDGQVNDPEFCDMVRQRSIRHTTVGFTARLEASRRFEASRRSEISLVALDGKSGENQ 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03497 1209 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 1142 IPR023298 -
Vifa4g03497 1209 FunFam Phospholipid-transporting ATPase 542 700 - -
Vifa4g03497 1209 Pfam E1-E2 ATPase 136 338 - -
Vifa4g03497 1209 Gene3D - 546 674 IPR023299 GO:0000166
Vifa4g03497 1209 SUPERFAMILY Calcium ATPase, transduction domain A 145 286 IPR008250 -
Vifa4g03497 1209 SUPERFAMILY HAD-like 421 919 IPR036412 -
Vifa4g03497 1209 Gene3D - 115 288 - -
Vifa4g03497 1209 Coils Coil 657 677 - -
Vifa4g03497 1209 SFLD Haloacid Dehalogenase 408 915 - -
Vifa4g03497 1209 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 701 IPR023299 GO:0000166
Vifa4g03497 1209 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Vifa4g03497 1209 Gene3D - 696 904 IPR023214 -
Vifa4g03497 1209 FunFam Phospholipid-transporting ATPase 117 288 - -
Vifa4g03497 1209 FunFam Phospholipid-transporting ATPase 700 904 - -
Vifa4g03497 1209 NCBIfam HAD-IC family P-type ATPase 830 946 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g03497 1209 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 29 1155 - -
Vifa4g03497 1209 Pfam Cation transport ATPase (P-type) 538 624 - -
Vifa4g03497 1209 CDD P-type_ATPase_APLT_Dnf-like 58 1024 - -
Vifa4g03497 1209 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Vifa4g03497 1209 NCBIfam phospholipid-translocating P-type ATPase 56 1149 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa4g03497 1209 SFLD p-type atpase 408 915 IPR044492 -
Vifa4g03497 1209 Pfam Phospholipid-translocating P-type ATPase C-terminal 892 1142 IPR032630 -
Vifa4g03497 1209 PRINTS P-type cation-transporting ATPase superfamily signature 864 883 - -
Vifa4g03497 1209 PRINTS P-type cation-transporting ATPase superfamily signature 750 760 - -
Vifa4g03497 1209 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03497 Vifa-Chr4 1096164459 1096168748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03497 10 1196 Primary Pumps ATPases AT3G25610 69.218 0.0 1737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03497 K01530 - gmx:100799312 2008.03