Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03486 ATGGCACAAACCGCTGTTTCCGGCGCCGAATCGCCTCGCCGTCGTCAAGGTTTACTCCGCGATCAAGTTCAATTAGTCAAAAGAAAAGACTCTTCCGATCGCTACGAGATTGTTCCGATTCAAGATTCTTTATCGTTTGAGAAAGGATTCTTCATTGTTATTCGTGCGTGTCAGTTATTGGCTCAAAACAATGACGGAATTGTGTTAGTAGGAGTTGCAGGTCCTTCTGGTGCTGGGAAAACTGTTTTTACTGATAAGGTTTTCAGTTTCATGCCGAGTATTGCTGTTATAAGCATGGATAATTATAATGATGCTAGTCGAATCATTGATGGAAACTTTGATGACCCTCGATTGACGGATTATGATACCTTGCTAAAAAATATACAGGATCTTAAATCAGGGAAGCCTGCTCAGGTTCCGATATACGATTTCAAGTCTAGTTCTCGCATCGGATACAGGACTATTGAAGTCCCTAGCTCCCGTATCTTAATCATTGAAGGAATCTACGCCTTAAGTGAAAAATTACGACCTTTGCTTGATCTTCGAGTTTCTGTCACCGGTGGAGTCCATTTTGACCTTGTCAAGCGTGTTTTGCGGGACATTCAACGAGCTGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTCCAAACAGCGCATATAAAAATTATTAATAAGTTTAATCCATTCACTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAAAATTGTGACAGGGGATCAAATCAAGGCAGTTATTGCTGCAGAGTATACTGAAACCAAAGAGGAAACATATGACATTTATCTTCTACCCCCCGGAGACGACCCTGAAGCATGTCAATCATATTTGAGAATGAGAAACCGGGATGGAAAATACAATCTTATGTTTGAGGAATGGGTTACAGATAGTCCATTCATTATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGTCTGCTTGGAGGGCTGATGGCCTTGGGGTATACAATTGCAGCAATCCTGAAAAGAAGCAGCCATGTCTTTCACGACAATAAAGTGTCCATAAAAACTGATTGGCTAGAACAACTTAATCGCCAATATGTCCAGGTGCAAGGGAAAGATAGAAACTATGTTAAGTTTGTAGCGCAGAAACTGGGTTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAATGATGTGATGACACTGCCAGATGATCTGAAGACAAAACTAAGCATAGATGATGACTCGGTTTCAAGCCCCAAAGAAGCACTTTCTAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAGTCGTGATATTTCACAGTCATATTCAAATCGAAGAGACAAGATTCTACCTAAGTTGACTAAACTTGCTATAAATAACAGAAGTTTTAACGCGAGAGCTCTAGAATCACCTGCTCCCATGGCCAACCAAGGAGTTATCATTCAACTTTCCGATCAAATTTCCACCCTAAATGAAAGAATGGACGAGTTCACCTCCCGTATTGAAGAGCTGAATTCAAACTTCGATGTTAAAAAAGTTTCAGCCAGTCAACAAAACATGGCTTTACAGGCTGAGACCTGTAATGGCTCTGGCCCTACTTCTCACTTTGTTACTGGATTAAGCAATGGTTCATTGTCTGGATCATTGCTTCCTAATTCTCTTTCATCCTCTCAATTGGTTAGAGAGTCTCCGCTAATGGAAGAGGTATTACTTGTTGCCCGAGGACAACGTCAAATCACGCATCAACTCGACACTTTGAGCAATCTTATGCAGGAATACTTGGGTGAGAAATCGCGGCCGGGAAGAAATGACCAGGCAGGCAAAATACTTGAAGTTGAATCCTTTGCCATCCCTCTGGTTCTGACTTTAGCCTTTGGTGCTGTTGGGGTGTTCTTGTTCAAGGGTTTGACATCTAAAAAATAA 1989 0.4113 MAQTAVSGAESPRRRQGLLRDQVQLVKRKDSSDRYEIVPIQDSLSFEKGFFIVIRACQLLAQNNDGIVLVGVAGPSGAGKTVFTDKVFSFMPSIAVISMDNYNDASRIIDGNFDDPRLTDYDTLLKNIQDLKSGKPAQVPIYDFKSSSRIGYRTIEVPSSRILIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSAKIVTGDQIKAVIAAEYTETKEETYDIYLLPPGDDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDNKVSIKTDWLEQLNRQYVQVQGKDRNYVKFVAQKLGLDGSYVPRTYIEQIQLEKLVNDVMTLPDDLKTKLSIDDDSVSSPKEALSRASADRRMKYLSRDISQSYSNRRDKILPKLTKLAINNRSFNARALESPAPMANQGVIIQLSDQISTLNERMDEFTSRIEELNSNFDVKKVSASQQNMALQAETCNGSGPTSHFVTGLSNGSLSGSLLPNSLSSSQLVRESPLMEEVLLVARGQRQITHQLDTLSNLMQEYLGEKSRPGRNDQAGKILEVESFAIPLVLTLAFGAVGVFLFKGLTSKK 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03486 662 PRINTS Uridine kinase signature 134 149 - -
Vifa4g03486 662 PRINTS Uridine kinase signature 67 84 - -
Vifa4g03486 662 PRINTS Uridine kinase signature 226 239 - -
Vifa4g03486 662 PRINTS Uridine kinase signature 190 200 - -
Vifa4g03486 662 SUPERFAMILY CYTH-like phosphatases 264 409 IPR033469 -
Vifa4g03486 662 Gene3D - 68 248 IPR027417 -
Vifa4g03486 662 Gene3D - 257 410 - -
Vifa4g03486 662 Coils Coil 502 529 - -
Vifa4g03486 662 Pfam Phosphoribulokinase / Uridine kinase family 70 238 IPR006083 GO:0005524|GO:0016301
Vifa4g03486 662 ProSiteProfiles CYTH domain profile. 250 412 IPR023577 -
Vifa4g03486 662 CDD UMPK_like 69 241 - -
Vifa4g03486 662 Pfam CYTH domain 274 406 IPR023577 -
Vifa4g03486 662 PANTHER URIDINE KINASE 18 425 - -
Vifa4g03486 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 238 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03486 Vifa-Chr4 1092157499 1092169717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03486 69 238 PRT Gene Family AT5G40870 28.492 1.79e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03486 K00876 - gmx:100803122 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03486 4 1092157499 1092169717 Vifa4g03486 4 1092157499 1092169717 ECH