Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03475 ATGGCTGATGTAACCTATCTCCGCCACCACCACGAACCCGACGATGACCCAACCCTAATCCCTTTACCCTATTGGTCTTCACCTTCCGATTTCGATCTCGATTTTGATCTCGATTTGTACTCCTCCGATCTCGATTTCCATCCCCACCACCACCAGTTCTCTCGTGAAAATTTTGTCATGGATCTCTTTCAACAGCGTGTAGAGCAATCTCAGATCGATCACACCGATCCTATCCATCAATCGCTAAACGACTCCGTTTTCGACAGTTTGAGTCTCGATTTAGCGTTAAATTCTACAGATCTATACATCGCTGAAGACGATTTTACCGATATGAGGGTTTCGAGATCAGATCCGATCAACGGTATGCGTATCGTTGAGATTGATTCGGAATCGGATGGCGAGGAAGTTGGCGGAATCGGAAACGAAAACAACGTGTTGTATGGGATCTGCGTGCATTCTGATGAAGAAGAGTTTAGCAATGTAATCGACGATGTTACGAGTTTTCCTTTCCGTTGGGATTCTCTTCAGTTGGAGGATAATCAGATATATGAAGATTTTGATTGGGAGGAAGTTGACGGTCGTTTGGATGGTATGCCGACTGGTAACGGTAACAATAGGTCAGTTAGTACTGTTCTTGATTTTCCGCATATCGAAGAATCGGGGGAAGACGAAGGAGAGCTTACATTGACAAGAGTTGGTGAAGGCATAGGAAATATCGAGTGGCAAGTGTTGTCGAATTCGAATGATTTAGGCACAAGCCCTGATACCTACCATGTTATTGCAGAGCCGTTTGAGGATAATGATGATTACATTCACACTACAGAGTATGATATGATGTTTGGGCAATTCATAGGTAATGATAACCCTTCAACGGGGAGGCCTCCGGCTTCTGTAACTGTGGTGCAGAATCTTCCTTTGGGGATTGTGACGAAAGATGATGTGGAAAACAACAATGCTTTGTGTGCAGTTTGTAAAGATGAATTTGCTGTTGGAGAGGAGGTGAAGTTGTTGCCTTGTTCTCATCGCTACCATGGCGATTGTATTGTTCCTTGGTTAGGGATTAGGAATACTTGTCCTGTTTGTCGCTACGAGTTCCCCACAGATGACGCTGATTATGAACGAAGGAAAGCGCTGATGTTGGCACGGAGAGCTTGA 1155 0.4459 MADVTYLRHHHEPDDDPTLIPLPYWSSPSDFDLDFDLDLYSSDLDFHPHHHQFSRENFVMDLFQQRVEQSQIDHTDPIHQSLNDSVFDSLSLDLALNSTDLYIAEDDFTDMRVSRSDPINGMRIVEIDSESDGEEVGGIGNENNVLYGICVHSDEEEFSNVIDDVTSFPFRWDSLQLEDNQIYEDFDWEEVDGRLDGMPTGNGNNRSVSTVLDFPHIEESGEDEGELTLTRVGEGIGNIEWQVLSNSNDLGTSPDTYHVIAEPFEDNDDYIHTTEYDMMFGQFIGNDNPSTGRPPASVTVVQNLPLGIVTKDDVENNNALCAVCKDEFAVGEEVKLLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKALMLARRA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03475 384 SMART ring_2 321 361 IPR001841 -
Vifa4g03475 384 Pfam Ring finger domain 321 362 IPR001841 -
Vifa4g03475 384 ProSiteProfiles Zinc finger RING-type profile. 321 362 IPR001841 -
Vifa4g03475 384 SUPERFAMILY RING/U-box 310 368 - -
Vifa4g03475 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 368 IPR013083 -
Vifa4g03475 384 FunFam E3 ubiquitin-protein ligase RING1-like 282 368 - -
Vifa4g03475 384 PANTHER SI:CH211-59O9.10 44 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03475 Vifa-Chr4 1089104357 1089105511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03475 19 368 C3H Transcription Factor Family AT5G60820 34.321 1.22e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03475 - - mtr:25493924 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03475 4 1089104357 1089105511 Vifa4g03475 4 1089104357 1089105511 ECH