Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03471 ATGGCAAGTTTTTCGCCTACATCCAGCAAACGCCCCAAATCCGAAGCAGAATCCGACGAAGAAAACAACAAGGAACAAGATGATTGCTGCGGAATTTGCTACGTCGAACGCGGAGTTTCAATTCCAGGTGAAATCAATTCCTGCAACCACTATTTTTGCTTCGTTTGCATCATGGAATGGGCCAAACACGAATCTAGATGCCCAATCTGTCGCCAGAGATTCTCCAACGTTCGTAGACTCCCTAAGCTTGGCGTCTTTTCTTCCTCACGGGACGTTAAGGTCCCTCTTCGTGACCAGGTTTGTCATCCTCGTGGAAATAGGACAAGTGGTCCTGTTGATTCTAATGCTGAACTCAAATGTTGTATTTGCCATGTTGTGAAAGATGAAAATCTTATAATAATATGCGATCTTTGCGATATGGCTTCGCATACGTATTGCGTTGGCCTGGGATACACCGCTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTATTTCCCGGGAGACTAATGCTAATTATGGGTTAGGCTTAGATCAACAAACTGTTGAGTTAACAGCTGAGCCTGGTGTAACCATCTTAGATATTGTGAGAGAAACAAGCAGCCAAGTGGCTAGAAGACCGATGATATCTTCTATTCGACAAAACAATTCTTTGTCTACGGTTAATCCTTTACCTTTAGTTGATATAGTGAGTAGATCCGAAGGTAAAAAGCCTGTGACGGCCGCGCAGCGTGCACAATGCAATGTCCAGGCGCTTCGTGAAAATTGGAATTCTTTGAGAAGTGGTTCATTGAAGTTCGATAGAAAATCATTTCAATCTGGTGGCTCGAGTAGTCAAAAACATGATTCTTGTTCCTTATCACGTGGCAAATTAGAGGGTTCACACTCGATGGCTTCCACAGGCCGTCAACAATCTACAGTCCAAGGTGCTCAATTTGGTAACATGGTGAATGATGGCGACTTGAAATATGATGTTCACAAAGCTTGGCAAATGATGGATAAAGCAAAGACGATGAAACAGACTCCTAGGAGAACTAGCAGAATTCCGCAGGTTGTGGATGATGATCCCTCATGTAGTGGCACTAGAGAAAAATCATTTGCACCTCGTAGTTGTCCAGAATTGAAAAACCTACAGCCCAGAACATTAGACTTTAGATGCACCAGAATAGAGGAGCTGTGTGGCTATTCTAGTCTGAAAAAAAATTTGGAAAATCACTTATCTCCGTTGTTGGGAGAGAAAAGGAAAAGTAGGGTTTCATGTGAGGAGAAGATACTGCATTTGAGGGACCATACTAGTACTACTCATTCAATAGGATGCAAGGAACGTCTATTGTTCGGTAAGGTCCATACTGGTACCCACAGTGCTCCCCGTCACGATGAAGCAAATTCTGTGAGGGAACAAAGGCAGTCTGCTTGCTTGGTAACTTCAGTAGGTTCAGCATCCTCTAATAAGGATGTGGTTATTTTCAATAAAGAAAAGAGATTTGCTAAAGGCTTTGGGAATGAGATCACAAAAAGTACTGAAGATGCAAAGGCCGAGATCCAGTCTCTTGTTAAACTGAATCTGAAGTGCTTAACTAGAGATAAACAATTAGGTGTCGAAACTTTCAAGTTAGTTGCGAGGCAAGCCACACATACCATCTTGGCTGCTTGCCATTCCGAGCAGCACAAGTCTAATATATGCTCCTTAAGCTCCGTATGCAGCCATACTGACCACATTACACAGATTCAGAAGTCCACTTTAATGACCAATTGTTGCCGACAATGTTTTCAGCTCTTTGTGAACGATATTGTCAAATCCATCATGTTGGAAAAAGTGGCTTGTTGTTCTTGA 1833 0.4266 MASFSPTSSKRPKSEAESDEENNKEQDDCCGICYVERGVSIPGEINSCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPKLGVFSSSRDVKVPLRDQVCHPRGNRTSGPVDSNAELKCCICHVVKDENLIIICDLCDMASHTYCVGLGYTAPEGDWFCHDCAISRETNANYGLGLDQQTVELTAEPGVTILDIVRETSSQVARRPMISSIRQNNSLSTVNPLPLVDIVSRSEGKKPVTAAQRAQCNVQALRENWNSLRSGSLKFDRKSFQSGGSSSQKHDSCSLSRGKLEGSHSMASTGRQQSTVQGAQFGNMVNDGDLKYDVHKAWQMMDKAKTMKQTPRRTSRIPQVVDDDPSCSGTREKSFAPRSCPELKNLQPRTLDFRCTRIEELCGYSSLKKNLENHLSPLLGEKRKSRVSCEEKILHLRDHTSTTHSIGCKERLLFGKVHTGTHSAPRHDEANSVREQRQSACLVTSVGSASSNKDVVIFNKEKRFAKGFGNEITKSTEDAKAEIQSLVKLNLKCLTRDKQLGVETFKLVARQATHTILAACHSEQHKSNICSLSSVCSHTDHITQIQKSTLMTNCCRQCFQLFVNDIVKSIMLEKVACCS 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03471 610 SUPERFAMILY RING/U-box 23 83 - -
Vifa4g03471 610 MobiDBLite consensus disorder prediction 267 306 - -
Vifa4g03471 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 80 IPR013083 -
Vifa4g03471 610 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Vifa4g03471 610 MobiDBLite consensus disorder prediction 335 366 - -
Vifa4g03471 610 Pfam Ring finger domain 29 71 IPR001841 -
Vifa4g03471 610 SUPERFAMILY FYVE/PHD zinc finger 111 165 IPR011011 -
Vifa4g03471 610 SMART ring_2 30 70 IPR001841 -
Vifa4g03471 610 SMART PHD_3 119 164 IPR001965 -
Vifa4g03471 610 PANTHER F18C1.6 PROTEIN 13 606 - -
Vifa4g03471 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 173 IPR013083 -
Vifa4g03471 610 ProSiteProfiles Zinc finger PHD-type profile. 117 166 IPR019787 -
Vifa4g03471 610 Pfam PHD-finger 120 164 IPR019787 -
Vifa4g03471 610 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Vifa4g03471 610 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03471 Vifa-Chr4 1088590565 1088592808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03471 120 167 C2H2 Transcription Factor Family AT3G01460 38.776 3.03e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa4g03471 PHD 3.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03471 - - tpra:123885278 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03471 4 1088590565 1088592808 Vifa4g03471 4 1088590565 1088592808 ECH