Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03468 ATGGAGCTTCCTCAATCTCGTCCATGTGGAGCCGAAGAAGCAGGGAGAAAACCGACGCATGATTTTCTATCGTTATATAGTAATTCAACTGCCGAACAAGATCCAAGATCATCTGTTCAAGCAAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAGCAGGTAGAAACAAAATCCAGTGCCAAAGAAGAAGCCACAGATGAAATCTCATCGGCTGTTCAGAAGCAACCGCCTTTACCCACACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACACTATTAGCCACATTAATTCCTACGTCAATAATACTCAAAGGGTTCCAAAGCCAGAAGCATCACTTTTCACTGTGCATCAAGCAACTAGTGCCGATAGAAACGATGACTCTAACTGTAGTTCACATACTTCAAGCGGTTTCACATTGTGGGAAGAGTCTGAGATTAAAAAGGGAAAGACAGAAAAGGAGAATAATGTCGGAGAGAAACCCATTATAGGAGTGGCAGATTCTGCTGCTAAGCTGGGGCAGTGGAGAATGACTGAGCGGGTGTCTCAATCCTTTTCTAACAATCGTCATGGCAGCTTCAACTCTCACTCTTCATCTCAAACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGATGAGCTAGAAAATGAAGGAACGTTTTTTCTCAAGAGAGAAACCTTGGATACTCAAAGAGGAGAACTGAGGGTGAAAGTCGATGGGAAGAGTAATGATCAAAAGCCAAACACCCCGAGATCAAAACATTCTGCAACAGAGCAGAGGAGAAGAAGCAAAATTAATGACAGATTTCAGATGTTGCGACAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTCTGTTAGAGGTCATTGAGTATATTCACTTTTTACAAGAGAAGGTACACAAGTATGAAGGTTCGTTCCAAGGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGCAGAGAAATAGTGATAGGCCAGCAGAAAGTTTTCAACCTCGCGGCACAAATAGTGGGTCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGAGGAGAAAATACCCATCTCCCCAACAATTCCTGCCTCTACTCCTAATGTAGAATCTGGCTTGAGCACAGCAGCTGCCTTCAAGACAATTGATCATCAGTCTGGAATAATGAATAAGACTTTTCAAATTCCTACTTCTTCCCAACCAAATATCTTTCCTTCAACCCAAATCAGTGGTTCAGGTGGAGCTGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACATCATTTATCAACCTTCAGTAGAAACTCAGACTATGACTTCTACCAATGAAAAGCTGAAAGAGAAAGAGCTGACTATTGAAGGAGGCGCCATTAGTATATCAAGTGTGTACTCACAAGGGTTGTTGGATACACTTACACACGCATTGCAGAGTTCGGGAGTGGATTTGTCACAAGCTAGCATTTCAGTGCAAATTGAACTTGGCAAGCAAGCAAAAATCACACCAAACGGACAATTATCAATGTGTGTTTCTAAGGATGACGAAGATCCTTCAAAAAATCAAAGGAAGATACGTTCTAGAGTCGCCGGCTCTGAGAAATCTGATCAAGCAGTAAAGAAGCTAAAGACTTGCAGAAGTTAA 1707 0.4224 MELPQSRPCGAEEAGRKPTHDFLSLYSNSTAEQDPRSSVQASYLKTHDFLRPLEQVETKSSAKEEATDEISSAVQKQPPLPTPASVEHLLPGGIGTYTISHINSYVNNTQRVPKPEASLFTVHQATSADRNDDSNCSSHTSSGFTLWEESEIKKGKTEKENNVGEKPIIGVADSAAKLGQWRMTERVSQSFSNNRHGSFNSHSSSQTTGQKNQSFMEMMKSAQDCAQDDELENEGTFFLKRETLDTQRGELRVKVDGKSNDQKPNTPRSKHSATEQRRRSKINDRFQMLRQLIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLMPWQRNSDRPAESFQPRGTNSGSNPSPTLLFASKIEEKIPISPTIPASTPNVESGLSTAAAFKTIDHQSGIMNKTFQIPTSSQPNIFPSTQISGSGGAVSQLRHRLASDAENIIYQPSVETQTMTSTNEKLKEKELTIEGGAISISSVYSQGLLDTLTHALQSSGVDLSQASISVQIELGKQAKITPNGQLSMCVSKDDEDPSKNQRKIRSRVAGSEKSDQAVKKLKTCRS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03468 568 MobiDBLite consensus disorder prediction 345 365 - -
Vifa4g03468 568 SMART finulus 272 322 IPR011598 GO:0046983
Vifa4g03468 568 MobiDBLite consensus disorder prediction 22 39 - -
Vifa4g03468 568 MobiDBLite consensus disorder prediction 249 282 - -
Vifa4g03468 568 MobiDBLite consensus disorder prediction 187 212 - -
Vifa4g03468 568 MobiDBLite consensus disorder prediction 1 39 - -
Vifa4g03468 568 CDD bHLH_AtBIM_like 265 341 - -
Vifa4g03468 568 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 316 IPR011598 GO:0046983
Vifa4g03468 568 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 15 565 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vifa4g03468 568 Gene3D - 263 337 IPR036638 GO:0046983
Vifa4g03468 568 Pfam Helix-loop-helix DNA-binding domain 268 317 IPR011598 GO:0046983
Vifa4g03468 568 FunFam BHLH domain class transcription factor 264 336 - -
Vifa4g03468 568 MobiDBLite consensus disorder prediction 531 568 - -
Vifa4g03468 568 MobiDBLite consensus disorder prediction 331 365 - -
Vifa4g03468 568 MobiDBLite consensus disorder prediction 57 84 - -
Vifa4g03468 568 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 337 IPR036638 GO:0046983
Vifa4g03468 568 MobiDBLite consensus disorder prediction 534 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03468 Vifa-Chr4 1087075821 1087088717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03468 1 520 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 50.464 9.15e-133 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g03468 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03468 - - gmx:100808016 811.601