Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03467 ATGGAGCTTCCTCAATCTCGTCCATGTGGAGCCGAAGAAGCAGGGAGAAAACCGACGCATGATTTTCTATCGTTATATAGTAATTCAACTGCCGAACAAGATCCAAGATCATCTGTTCAAGCAAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAGCAGGTAGAAACAAAATCCAGTGCCAAAGAAGAAGCCACAGATGAAATCTCATCGGCTGTTCAGAAGCAACCGCCTTTACCCACACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACACTATTAGCCACATTAATTCCTACGTCAATAATACTCAAAGGGTTCCAAAGCCAGAAGCATCACTTTTCACTGTGCATCAAGCAACTAGTGCCGATAGAAACGATGACTCTAACTGTAGTTCACATACTTCAAGCGGTTTCACATTGTGGGAAGAGTCTGAGATTAAAAAGGGAAAGACAGAAAAGGAGAATAATGTCGGAGAGAAACCCATTATAGGAGTGGCAGATTCTGCTGCTAAGCTGGGGCAGTGGAGAATGACTGAGCGGGTGTCTCAATCCTTTTCTAACAATCGTCATGGCAGCTTCAACTCTCACTCTTCATCTCAAACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGATGAGCTAGAAAATGAAGGAACGTTTTTTCTCAAGAGAGAAACCTTGGATACTCAAAGAGGAGAACTGAGGGTGAAAGTCGATGGGAAGAGTAATGATCAAAAGCCAAACACCCCGAGATCAAAACATTCTGCAACAGAGCAGAGGAGAAGAAGCAAAATTAATGACAGATTTCAGATGTTGCGACAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTCTGTTAGAGGTCATTGAGTATATTCACTTTTTACAAGAGAAGGTACACAAGTATGAAGGTTCGTTCCAAGGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGAGAAATAGTGATAGGCCAGCAGAAAGTTTTCAACCTCGCGGCACAAATAGTGGGTCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGAGGAGAAAATACCCATCTCCCCAACAATTCCTGCCTCTACTCCTAATGTAGAATCTGGCTTGAGCACAGCAGCTGCCTTCAAGACAATTGATCATCAGTCTGGAATAATGAATAAGACTTTTCAAATTCCTACTTCTTCCCAACCAAATATCTTTCCTTCAACCCAAATCAGTGGTTCAGGTGGAGCTGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACATCATTTATCAACCTTCAGTAGAAACTCAGACTATGACTTCTACCAATGAAAAGCTGAAAGAGAAAGAGCTGACTATTGAAGGAGGCGCCATTAGTATATCAAGTGTGTACTCACAAGGGTTGTTGGATACACTTACACACGCATTGCAGAGTTCGGGAGTGGATTTGTCACAAGCTAGCATTTCAGTGCAAATTGAACTTGGCAAGCAAGCAAAAATCACACCAAACGGACAATTATCAATGTGTGTTTCTAAGGATGACGAAGATCCTTCAAAAAATCAAAGGAAGATACGTTCTAGAGTCGCCGGCTCTGAGAAATCTGATCAAGCAGTAAAGAAGCTAAAGACTTGCAGAAGTTAA 1704 0.4219 MELPQSRPCGAEEAGRKPTHDFLSLYSNSTAEQDPRSSVQASYLKTHDFLRPLEQVETKSSAKEEATDEISSAVQKQPPLPTPASVEHLLPGGIGTYTISHINSYVNNTQRVPKPEASLFTVHQATSADRNDDSNCSSHTSSGFTLWEESEIKKGKTEKENNVGEKPIIGVADSAAKLGQWRMTERVSQSFSNNRHGSFNSHSSSQTTGQKNQSFMEMMKSAQDCAQDDELENEGTFFLKRETLDTQRGELRVKVDGKSNDQKPNTPRSKHSATEQRRRSKINDRFQMLRQLIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLMPWRNSDRPAESFQPRGTNSGSNPSPTLLFASKIEEKIPISPTIPASTPNVESGLSTAAAFKTIDHQSGIMNKTFQIPTSSQPNIFPSTQISGSGGAVSQLRHRLASDAENIIYQPSVETQTMTSTNEKLKEKELTIEGGAISISSVYSQGLLDTLTHALQSSGVDLSQASISVQIELGKQAKITPNGQLSMCVSKDDEDPSKNQRKIRSRVAGSEKSDQAVKKLKTCRS 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03467 567 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 15 564 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vifa4g03467 567 MobiDBLite consensus disorder prediction 530 567 - -
Vifa4g03467 567 SMART finulus 272 322 IPR011598 GO:0046983
Vifa4g03467 567 MobiDBLite consensus disorder prediction 22 39 - -
Vifa4g03467 567 MobiDBLite consensus disorder prediction 249 282 - -
Vifa4g03467 567 MobiDBLite consensus disorder prediction 533 567 - -
Vifa4g03467 567 MobiDBLite consensus disorder prediction 187 212 - -
Vifa4g03467 567 MobiDBLite consensus disorder prediction 1 39 - -
Vifa4g03467 567 MobiDBLite consensus disorder prediction 348 362 - -
Vifa4g03467 567 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 337 IPR036638 GO:0046983
Vifa4g03467 567 CDD bHLH_AtBIM_like 265 341 - -
Vifa4g03467 567 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 316 IPR011598 GO:0046983
Vifa4g03467 567 Gene3D - 263 337 IPR036638 GO:0046983
Vifa4g03467 567 Pfam Helix-loop-helix DNA-binding domain 268 317 IPR011598 GO:0046983
Vifa4g03467 567 MobiDBLite consensus disorder prediction 341 362 - -
Vifa4g03467 567 FunFam BHLH domain class transcription factor 264 336 - -
Vifa4g03467 567 MobiDBLite consensus disorder prediction 57 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03467 Vifa-Chr4 1087075821 1087088717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03467 1 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 50.186 2.17e-131 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g03467 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03467 - - gmx:100808016 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03467 4 1087075821 1087088717 Vifa4g03467 4 1087075821 1087088717 ECH