Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03466 ATGGAGCTTCCTCAATCTCGTCCATGTGGAGCCGAAGGGAGAAAACCGACGCATGATTTTCTATCGTTATATAGTAATTCAACTGCCGAACAAGATCCAAGATCATCTGTTCAAGCAAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAGCAGGTAGAAACAAAATCCAGTGCCAAAGAAGAAGCCACAGATGAAATCTCATCGGCTGTTCAGAAGCAACCGCCTTTACCCACACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACACTATTAGCCACATTAATTCCTACGTCAATAATACTCAAAGGGTTCCAAAGCCAGAAGCATCACTTTTCACTGTGCATCAAGCAACTAGTGCCGATAGAAACGATGACTCTAACTGTAGTTCACATACTTCAAGCGGTTTCACATTGTGGGAAGAGTCTGAGATTAAAAAGGGAAAGACAGAAAAGGAGAATAATGTCGGAGAGAAACCCATTATAGGAGTGGCAGATTCTGCTGCTAAGCTGGGGCAGTGGAGAATGACTGAGCGGGTGTCTCAATCCTTTTCTAACAATCGTCATGGCAGCTTCAACTCTCACTCTTCATCTCAAACAACTGGACAGAAGAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGATGAGCTAGAAAATGAAGGAACGTTTTTTCTCAAGAGAGAAACCTTGGATACTCAAAGAGGAGAACTGAGGGTGAAAGTCGATGGGAAGAGTAATGATCAAAAGCCAAACACCCCGAGATCAAAACATTCTGCAACAGAGCAGAGGAGAAGAAGCAAAATTAATGACAGATTTCAGATGTTGCGACAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTCTGTTAGAGGTCATTGAGTATATTCACTTTTTACAAGAGAAGGTACACAAGTATGAAGGTTCGTTCCAAGGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGAGAAATAGTGATAGGCCAGCAGAAAGTTTTCAACCTCGCGGCACAAATAGTGGGTCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGAGGAGAAAATACCCATCTCCCCAACAATTCCTGCCTCTACTCCTAATGTAGAATCTGGCTTGAGCACAGCAGCTGCCTTCAAGACAATTGATCATCAGTCTGGAATAATGAATAAGACTTTTCAAATTCCTACTTCTTCCCAACCAAATATCTTTCCTTCAACCCAAATCAGTGGTTCAGGTGGAGCTGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAGAACATCATTTATCAACCTTCAGTAGAAACTCAGACTATGACTTCTACCAATGAAAAGCTGAAAGAGAAAGAGCTGACTATTGAAGGAGGCGCCATTAGTATATCAAGTGTGTACTCACAAGGGTTGTTGGATACACTTACACACGCATTGCAGAGTTCGGGAGTGGATTTGTCACAAGCTAGCATTTCAGTGCAAATTGAACTTGGCAAGCAAGCAAAAATCACACCAAACGGACAATTATCAATGTGTGTTTCTAAGGATGACGAAGATCCTTCAAAAAATCAAAGGAAGATACGTTCTAGAGTCGCCGGCTCTGAGAAATCTGATCAAGCAGTAAAGAAGCTAAAGACTTGCAGAAGTTAA 1698 0.4217 MELPQSRPCGAEGRKPTHDFLSLYSNSTAEQDPRSSVQASYLKTHDFLRPLEQVETKSSAKEEATDEISSAVQKQPPLPTPASVEHLLPGGIGTYTISHINSYVNNTQRVPKPEASLFTVHQATSADRNDDSNCSSHTSSGFTLWEESEIKKGKTEKENNVGEKPIIGVADSAAKLGQWRMTERVSQSFSNNRHGSFNSHSSSQTTGQKNQSFMEMMKSAQDCAQDDELENEGTFFLKRETLDTQRGELRVKVDGKSNDQKPNTPRSKHSATEQRRRSKINDRFQMLRQLIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLMPWRNSDRPAESFQPRGTNSGSNPSPTLLFASKIEEKIPISPTIPASTPNVESGLSTAAAFKTIDHQSGIMNKTFQIPTSSQPNIFPSTQISGSGGAVSQLRHRLASDAENIIYQPSVETQTMTSTNEKLKEKELTIEGGAISISSVYSQGLLDTLTHALQSSGVDLSQASISVQIELGKQAKITPNGQLSMCVSKDDEDPSKNQRKIRSRVAGSEKSDQAVKKLKTCRS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03466 565 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g03466 565 MobiDBLite consensus disorder prediction 339 360 - -
Vifa4g03466 565 Pfam Helix-loop-helix DNA-binding domain 266 315 IPR011598 GO:0046983
Vifa4g03466 565 FunFam BHLH domain class transcription factor 262 334 - -
Vifa4g03466 565 Gene3D - 261 335 IPR036638 GO:0046983
Vifa4g03466 565 MobiDBLite consensus disorder prediction 53 68 - -
Vifa4g03466 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 314 IPR011598 GO:0046983
Vifa4g03466 565 MobiDBLite consensus disorder prediction 528 565 - -
Vifa4g03466 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 335 IPR036638 GO:0046983
Vifa4g03466 565 MobiDBLite consensus disorder prediction 531 565 - -
Vifa4g03466 565 MobiDBLite consensus disorder prediction 247 280 - -
Vifa4g03466 565 MobiDBLite consensus disorder prediction 185 210 - -
Vifa4g03466 565 MobiDBLite consensus disorder prediction 53 82 - -
Vifa4g03466 565 MobiDBLite consensus disorder prediction 346 360 - -
Vifa4g03466 565 SMART finulus 270 320 IPR011598 GO:0046983
Vifa4g03466 565 CDD bHLH_AtBIM_like 263 339 - -
Vifa4g03466 565 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 562 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03466 Vifa-Chr4 1087075821 1087088717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03466 1 517 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 50.000 2.89e-130 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g03466 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03466 - - gmx:100808016 821.231