Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03455 ATGGGGAGAGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAAATCAATAGACAAGTTACTTTTTCAAAACGAAGGTCTGGTTTGTTGAAGAAAGCTCATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCTACTAAAGGCAAGCTTTTTGAATACTCCAGCGATCCTTGTATGGAAAGAATTCTCGAACGATACGAGAGATATTCATATACGGAGAGACAGCTTGTTGCTAATGATCAATCACCAAATGAAAACTGGGTTCTAGAACATGCAAAACTGAAAGCTAGGGTGGAAGTACTTCAGAAAAATCAAAGGAATTATATGGGAGAAGAGTTGGATGGGTTAAGTCTCAAAGAGCTTCAGAGTTTGGAACAACAACTTGATTCTGCTCTCAAACACATTAGATCACGAAAGAACCAAGTCATGTATGAATCTATTTCAGCACTTCAGAAAAAGGATAAGGCACTCCAGGAACATAACAATTTGCTCGCAAAGAAGATAAAAGAAAAAGAGAAAGAGCTTGCTCAAGAGGAGCTGCAAAATAGCATGGAAGTGGCTCCAATTGAAAATCAACCATTAGAATCTATGATTGCAGGACGGTCCTTACAAGAAAGTTGCAATGAAGAAACTGGAGCAGAAACTCGAGGTAGTGCGATTCTTCCGCCATGGATGGTTCGTCCTATAAATGAATAG 708 0.3941 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYTERQLVANDQSPNENWVLEHAKLKARVEVLQKNQRNYMGEELDGLSLKELQSLEQQLDSALKHIRSRKNQVMYESISALQKKDKALQEHNNLLAKKIKEKEKELAQEELQNSMEVAPIENQPLESMIAGRSLQESCNEETGAETRGSAILPPWMVRPINE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03455 235 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vifa4g03455 235 Coils Coil 125 145 - -
Vifa4g03455 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa4g03455 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa4g03455 235 Coils Coil 88 108 - -
Vifa4g03455 235 Coils Coil 154 190 - -
Vifa4g03455 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g03455 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g03455 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa4g03455 235 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vifa4g03455 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Vifa4g03455 235 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g03455 235 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vifa4g03455 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa4g03455 235 MobiDBLite consensus disorder prediction 207 235 - -
Vifa4g03455 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa4g03455 235 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g03455 235 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03455 Vifa-Chr4 1082655990 1082659139 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03455 1 206 MADS-box Gene Family AT1G26310 62.673 9.46e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g03455 K-box 3.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03455 K09264 K09260 gmx:100805348 325.865