Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03453 ATGGGAAGAGGGAGAGTTGAACTAAAAAGGATAGAGAACAAAATTAACAGACAAGTCACTTTTGCTAAGAGAAGAAACGGTGTACTCAAGAAAGCTTATGAGCTTTCAATCCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGCAAACTCTATGAGTTCAGCAGCACTTCCAGCATGATGAAAACTTTGGAGAAGTACCACAAGTACAGTTACAATGCACTAGAGACCAATCAACCAGCCAATGATGCTCATAATTACCAGGAATATGTGAGATTAAAAGCAAATGTAGAAATCTTACAACGTTCACAAAGGAACCTTCTCGGAGAAGATATAGCACAAATGAATACAAATGAACTCCAGCAAATAGAGAATCAGTTAGAGGCAGCACTTAAAAATATAAGATCAACAAAGACTCAATTCATGCTTGATCAACTCGCTGATCTTCACAACCGGGAAACAGTGCTAGTTGAAACAAATCATGCACTAAGAAGTAAGTTGGAAGAAAATAATGAGTCTAATATCCATTACACACGCTTTCATCCTCAATCAGAGGGATTTTTTCACCCTGTGGGAGTGAATTCCAACTTGCAAATTGGATACAATATGATGGGTTCTTGTGATGATGTAAACGTTGGAGCTCCATCCTTAAGTATGAATGGATTCTCCACTGGCTGGATGCTTTGA 696 0.3879 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSILCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYHKYSYNALETNQPANDAHNYQEYVRLKANVEILQRSQRNLLGEDIAQMNTNELQQIENQLEAALKNIRSTKTQFMLDQLADLHNRETVLVETNHALRSKLEENNESNIHYTRFHPQSEGFFHPVGVNSNLQIGYNMMGSCDDVNVGAPSLSMNGFSTGWML 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03453 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa4g03453 231 FunFam MADS-box transcription factor 1 13 92 - -
Vifa4g03453 231 Coils Coil 116 143 - -
Vifa4g03453 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa4g03453 231 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Vifa4g03453 231 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vifa4g03453 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Vifa4g03453 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa4g03453 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa4g03453 231 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa4g03453 231 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Vifa4g03453 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g03453 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa4g03453 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g03453 231 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03453 Vifa-Chr4 1081458269 1081470443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03453 1 231 MADS-box Gene Family AT5G15800 53.053 5.39e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa4g03453 K-box 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03453 K09264 - gmx:100797819 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00378 1 61007259 61010322 Vifa4g03453 4 1081458269 1081470443 ECH
Vifa4g03453 4 1081458269 1081470443 Vifa4g03453 4 1081458269 1081470443 ECH