Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03451 ATGGAATCTTGGAGTTATATATCTGAAGAAAAGGGTTATGTTTCCAATGAGAATCAAGGTTCTGAAGAAATGGGTTTTTGTGAAATGTTAGGGAAACAATTTTCAGATGATTTCAATTTCATTGGGAATGTTTCAAGCAATAAACTTGATGCTAAATTTGGTGACCCAATTGGGTTTTCTATGAAAGGGGAGACGAATTCCAAGCTTTCAAACTCTGTGGTGGAAACTAATGGTTGGGATTCTCTTATTGATTTGAAGCTGGGGCATTTTGGTGATCATGGTCATGGAGCACCTATTTCGTCTTCTTGTGAATCATCAACCCCTCCCAAGAGAGTTAGAATGCTTTCACTGACTGCTTACTGTCAAGTTTATGGCTGTAACAAGGACCTTAGTTCTTGTAAAGATTACCACAAAAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCTGTAGTCATAGTGAATGGAATTGAGCAGAGGTTTTGTCAACAATGTAGCAGGTTTCATATGCTGTCTGAATTTGATGATGGTAAGCGCAGTTGCCGTAAAAGACTTGCAGGCCATAATGAGCGTCGAAGGAAACCACAAGTAGGCGTTCACTCCGCCAATTCCAGGAGATTGTTTCAGCCATGTGGTGATATAAGGTTCAAAGGAACCAAGCCTCCACAAGCATCATTTATCTGTCCAGAAGTGTTCTCAAATGGTTTCTCGAGACCGATTAAATCAGAACATGAAACCGGTTTTAGACATTTATCTTCTGTGCCTGTTACGAATGGACATCATCAACCAAGTTCTTCGTTTGCTTCGTACAACGGCAAACAATTTCCCTTCCTTCATGAAAATGTTGCCACATCTACTACAGGTAGCAGCGTGTTCGGTGAAAACAATAACCATTATGCACATGCGGTTGGCAACACCTCGTTAGGAAGGGAAGCTTTCAATGCTTTTCATGCTGCATCAACAGTTCGAGGATTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAATCCAAGAACACTTCAAGCCAATCCTCGGGAATTCCGTTTGATCACCCTTCGGTTATTCCAAGAAGCCATAGCCATCTATATAGCATAAGATCACAAACGACATCCTCAAGCCGAGTGTCAGATGGATTTTTATCAGAATTAAATCCTGCAGATGGAGGTCATCTCAGTCCTTTATTGATACCAGACAATAATGATATTGTGAACTTTGAAATGGCAGATGGAATCTTTCAAGATTCAGATTTTTTGAATGCTAAAGACAGTCTTTCATGTGAAGATGATGCAACCATTGACTTACTACAACTGTCGTCGCAGCTTCAACGAGTCGAGCATCATAGACAATCTTTGCAGGTGAAGAATGAGAGTGATTCTTCTTGCACTCTCCGGATTACTTAA 1413 0.4069 MESWSYISEEKGYVSNENQGSEEMGFCEMLGKQFSDDFNFIGNVSSNKLDAKFGDPIGFSMKGETNSKLSNSVVETNGWDSLIDLKLGHFGDHGHGAPISSSCESSTPPKRVRMLSLTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHMLSEFDDGKRSCRKRLAGHNERRRKPQVGVHSANSRRLFQPCGDIRFKGTKPPQASFICPEVFSNGFSRPIKSEHETGFRHLSSVPVTNGHHQPSSSFASYNGKQFPFLHENVATSTTGSSVFGENNNHYAHAVGNTSLGREAFNAFHAASTVRGLSGISDSCALSLLSSQSKNTSSQSSGIPFDHPSVIPRSHSHLYSIRSQTTSSSRVSDGFLSELNPADGGHLSPLLIPDNNDIVNFEMADGIFQDSDFLNAKDSLSCEDDATIDLLQLSSQLQRVEHHRQSLQVKNESDSSCTLRIT 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03451 470 SUPERFAMILY SBT domain 119 199 IPR036893 GO:0003677|GO:0005634
Vifa4g03451 470 ProSiteProfiles Zinc finger SBP-type profile. 118 195 IPR004333 GO:0003677
Vifa4g03451 470 Pfam SBP domain 121 194 IPR004333 GO:0003677
Vifa4g03451 470 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 402 IPR044817 GO:0003677
Vifa4g03451 470 Gene3D - 117 182 IPR036893 GO:0003677|GO:0005634
Vifa4g03451 470 FunFam Squamosa promoter-binding-like protein 14 113 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03451 Vifa-Chr4 1079278572 1079280354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03451 83 232 SBP-box Gene Family AT1G69170 57.143 6.43e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa4g03451 SBP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03451 - - gmx:100817547 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03451 4 1079278572 1079280354 Vifa4g03451 4 1079278572 1079280354 ECH