Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03450 ATGAACGGTCTCAGAGGCGAAAGAGCACCTCTCTTGGAAGCTGGACGCGGCGGTGGAAGGGAAAAGAGACGCGATGATTCCACGGAAGATCAAGTCTCAGACCTTGAAAGTGGTGATGCACCGGCTGCACATGTTGGATTCTTTAGAGTCTTTTCACTTGCAAAGCCTGAAGCTGGAAAGTTGCTCATTGCTACCATAGCACTGTTTATTGCGGCTACATCAAGTACCTTAGTTCAAAAATTTGGTGGCAAGATAATTGATATTGTCTCGGGGGATATCACAACTCCTGAGGAGAAAGATGCGGCATTAGATGCTGTCAAGAACACCATACTAGAAATCTTGATCATTGTTATTATCGGTTCAGTTTGCTCGGCACTTCGAGCCTGGCTTTTTTATTCGGCCAGCGAAAGGGTTGTAGCACGCCTGAGGAAGAATTTGTTCGGCCACCTTGTAAACCAGGAAATTGCCTTCTTTGATGTTACACGGACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATTAAGAATGCTGCAACTACCAACCTCTCAGAGGCCCTGAGAAACTTGTCAACTGCATTTATTGGTCTCAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTGCCCCTTATATCTGTTGCTGTTCGTCAGTTTGGCCGTTTCTTGCGTGAACTTTCTCATAAAACTCAAGCAGCAGCTGCAGTAGCTTCTTCAATAGCTGAAGAATCCTTTGGTGCAATAAGAACAGTTAGATCTTTTGCTCAGGAAGATTATGAAATAGAACGCTACTCTGAGAAAGTTAATGAAACTCTAGCACTTGGACTCAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGTCTTAATGCAGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACAATTAAAGGTGCCATGTCCTCGGGGGATCTCACATCTTTCATTCTTTATAGTCTCTCAGTTGGATCTTCTATATCTGGCTTGTCAGGATTGTATACTGTAGTTATGAAAGCCGCCGGTGCTAGTAGAAGGGTTTTTCAACTGTTGGATCGTGCCTCATCCATGCCCAAGTCCGGAGATAAATGTCCTCTAGGTGATCATGATGGAGAAGTGGAATTAGATGATGTATGGTTTTCGTATCCATCGCGCCCTAATCATATGGTGCTCAAGGGTATTAATATAAAACTGCAACCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGCGGTGGCGGAAAGACTACGATTGCAAACTTAATCGAAAGATTTTATGATCCAACCAAGGGAAAGATTATGGTGAATGGGATTCCTCTGGTTGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACGCTCTTCAATTGTTCCATAGAGGAAAACATAGCTTATGGATTCGATGGCAAAGTAGATGCCGCTGATATCGAAAATGCAGCTAAAATGGCCAATGCGCACGAGTTCATATCAAAATTCCCCGAACAATACAAGACATTTGTTGGAGAGCGAGGTATAAGGCTTTCAGGAGGACAGAAACAAAGAATAGCAATTGCCAGAGCCTTGCTTATGGACCCGAAAATTCTCCTACTGGATGAAGCCACCAGTGCCTTAGATGCTGAAAGCGAATACTTAGTGCAGGATGCTATGGATTCTATCATGAAAGGAAGGACAGTTCTAGTCATTGCTCATAGGTTATCAACTGTTAAAACTGCTAATACTGTTGCAGTTGTTTCTGATGGTCAAATAGTTGAGAGCGGTACTCATGACGAGCTTCTAGACAAGAATGGTGTTTATACTGCATTAGTCAGGAGACAATTACAGACAACGAAAACTGAAATCTAA 1899 0.426 MNGLRGERAPLLEAGRGGGREKRRDDSTEDQVSDLESGDAPAAHVGFFRVFSLAKPEAGKLLIATIALFIAATSSTLVQKFGGKIIDIVSGDITTPEEKDAALDAVKNTILEILIIVIIGSVCSALRAWLFYSASERVVARLRKNLFGHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALAVVPLISVAVRQFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEIERYSEKVNETLALGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGAMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRASSMPKSGDKCPLGDHDGEVELDDVWFSYPSRPNHMVLKGINIKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKIMVNGIPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDAADIENAAKMANAHEFISKFPEQYKTFVGERGIRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTANTVAVVSDGQIVESGTHDELLDKNGVYTALVRRQLQTTKTEI 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03450 632 MobiDBLite consensus disorder prediction 1 37 - -
Vifa4g03450 632 MobiDBLite consensus disorder prediction 14 31 - -
Vifa4g03450 632 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 62 352 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g03450 632 ProSitePatterns ABC transporters family signature. 526 540 IPR017871 GO:0005524|GO:0016887
Vifa4g03450 632 CDD ABC_6TM_AtABCB27_like 64 360 - -
Vifa4g03450 632 Gene3D - 384 629 IPR027417 -
Vifa4g03450 632 CDD ABC_MTABC3_MDL1_MDL2 386 624 - -
Vifa4g03450 632 SMART AAA_5 413 607 IPR003593 GO:0016887
Vifa4g03450 632 Pfam ABC transporter transmembrane region 61 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g03450 632 SUPERFAMILY ABC transporter transmembrane region 49 366 IPR036640 GO:0005524|GO:0016020
Vifa4g03450 632 FunFam ABC transporter B family member 25 384 626 - -
Vifa4g03450 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 624 IPR027417 -
Vifa4g03450 632 Gene3D ABC transporter type 1, transmembrane domain 113 383 IPR036640 GO:0005524|GO:0016020
Vifa4g03450 632 FunFam ABC transporter B family member 25 113 383 - -
Vifa4g03450 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 386 623 IPR003439 GO:0005524
Vifa4g03450 632 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 40 629 IPR039421 -
Vifa4g03450 632 Pfam ABC transporter 404 554 IPR003439 GO:0005524
Vifa4g03450 632 PIRSF ABC_prm/ATPase_B 17 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03450 Vifa-Chr4 1078714468 1078718344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03450 136 632 Calmodulin-binding Proteins AT2G36910 36.759 8.01e-94 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03450 - - var:108320153 1042.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03450 4 1078714468 1078718344 Vifa4g03450 4 1078714468 1078718344 ECH