Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03437 ATGGCGAAAACTGTCACTCCAAACGCCATTTCTACCTTGTTTGCAAATCCGTCTCCTGCTTCTTCATCAGATGTTCCTGATATCGTTGTTCAAGTTTTGGATCTCCATCCCAGCGGAAACAGATACATGTTCACTGCTAATGATGGAACGAAGAAGCTGAAGTCAATTCTTCAGTCGAGTCTGTCCTCAGAGGTGCTTTCTGGGAAGATTCAGAACCTTGGTCTTATTCGCGTCCTTGATTATACTCTCAATGATATCCGCAATGAGAAGTTCCTAATTGTAACCAACTGTGAACCTGTTTCTCCCGCTCTTGAAGCGGAGATAAAAAGTGAACAACCCAGTATCACTTTGAAGCCAAAGACGGAATCTGGTATTGATTTGAAGCCGAAGCAGGGTGTTGTTTCGAAATCTGCTGCTCAGATCGTGCACGAGCAACATGGGAATTTGGCTCCTGCTGCTAGAATGGCTATGACACGTAGGGTGCGTCCTCTAGTTTCTTTGAATCCTTATATGGGTAGTTGGACAATCAAGGTCAGTGTTACAAGCAAAGGAACCTTGCGTACATATAAGAATGCTAGAGGAGAAGGATGTGTATTCAATGTCGAGTTAACTGATGAAGATGGTACTCAGATTCAAGCAACAATGTTTAATGATGCGGCAAGGAAGTTTTATGAGAAGTTTGTTATGGGAAAGGTTTATTATGTTTCAAAAGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGATTATGAGATGACACTGAATGAAAATTCTGAGGTGGAAGAGGTTGCTAGTGAAGCTAGTTTTGTTCCGGAGACAAAATTCAATTTTGTCCCAATTGATCAGTTGGGTCCTCATGTCAATAAGTCAGATCTTGTTGATGTTGTTGGGATTGTTAAGAATGTGTCTTCAACAATGAGCATCAGAAGAAAAAGTAACAATGAGACTGTTCCCAAGCGTGACATTACTATTGCAGATGAAAGCAAGAAGACAGTTGTTGTGTCTTTGTGGGGTGATCTTGCAACCAACATAGGGCAAGAGTTATTGGACATGGCTGATAAATCTCCAGTAGTTGCAATCAAATCCGTGAAAGTTGGAGACTTTCAAGGTGTTTCTTTGTCAGCCATAAGCAAAAGTTTGGTCCTGATCGATCCCGAAGTACCTGAAGCTCAGAAGCTCAGATTCTGGTATGACTCTGAAGGCAAGGATACTGCAATGGCTGCTTTAAGCTCTGGCTCAATTACTTCCAGCGGTGGAAGTAGATCGGTGTACTCTGACCGTGTTCCACTCTCTTACATAACCTCCAACCCCTCCTTGGGGGATGAGAAGCCTGCTTTCTTCAGTATTAGAGGATACATAAATTCCATTAGGCCAGATCAGGCAATGTGGTATCGTGCTTGTAAGACTTGCAATAAGAAAGTCTCTGAAAGCATTGATGCTGGGTACTGGTGTGAAAGTTGCATGAAAAATGATCAAGAGTGCAATTTACGGTATATTATGATTGCTAGATTTATAGATGAAAGTGGTGAGGCATATATATCAGCCTTTAATGAAGAGGCTGAGAGACTCATTGGGTGCTCTGCTGATGAACTAGGCAACCTCAGATCACAGGAGGGAGAAGAAAATCCTTATCAGATGAAATTGAAGCAAGCTACATGGATTCCACACCTCTTGCGAGTTAGTGTTTCTCAGAATGAGTATAATAATGAGAAGAGGCAAAGGATAACAGCTCGAACAGTTGTCCCTGTTGACTTTGCTGTTGAGTCAAAGATCCTTCTTGAAGACATATCAAAGATGGTAGCCTCTCATTAA 1824 0.4172 MAKTVTPNAISTLFANPSPASSSDVPDIVVQVLDLHPSGNRYMFTANDGTKKLKSILQSSLSSEVLSGKIQNLGLIRVLDYTLNDIRNEKFLIVTNCEPVSPALEAEIKSEQPSITLKPKTESGIDLKPKQGVVSKSAAQIVHEQHGNLAPAARMAMTRRVRPLVSLNPYMGSWTIKVSVTSKGTLRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYEKFVMGKVYYVSKGTLKVANKQFKTVQNDYEMTLNENSEVEEVASEASFVPETKFNFVPIDQLGPHVNKSDLVDVVGIVKNVSSTMSIRRKSNNETVPKRDITIADESKKTVVVSLWGDLATNIGQELLDMADKSPVVAIKSVKVGDFQGVSLSAISKSLVLIDPEVPEAQKLRFWYDSEGKDTAMAALSSGSITSSGGSRSVYSDRVPLSYITSNPSLGDEKPAFFSIRGYINSIRPDQAMWYRACKTCNKKVSESIDAGYWCESCMKNDQECNLRYIMIARFIDESGEAYISAFNEEAERLIGCSADELGNLRSQEGEENPYQMKLKQATWIPHLLRVSVSQNEYNNEKRQRITARTVVPVDFAVESKILLEDISKMVASH 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03437 607 Pfam OB-fold nucleic acid binding domain 175 260 IPR004365 GO:0003676
Vifa4g03437 607 SUPERFAMILY Nucleic acid-binding proteins 1 104 IPR012340 -
Vifa4g03437 607 Gene3D - 274 414 IPR012340 -
Vifa4g03437 607 Gene3D - 160 269 IPR012340 -
Vifa4g03437 607 CDD RPA1_DBD_B 296 402 - -
Vifa4g03437 607 Pfam Replication factor-A protein 1, N-terminal domain 5 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vifa4g03437 607 Pfam Replication factor-A C terminal domain 450 596 IPR013955 -
Vifa4g03437 607 Gene3D - 4 114 IPR012340 -
Vifa4g03437 607 FunFam Replication protein A subunit 273 412 - -
Vifa4g03437 607 Pfam Replication protein A OB domain 290 387 IPR031657 -
Vifa4g03437 607 SUPERFAMILY Nucleic acid-binding proteins 162 269 IPR012340 -
Vifa4g03437 607 PANTHER REPLICATION FACTOR A 1, RFA1 174 566 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa4g03437 607 NCBIfam replication factor-a protein 1 (rpa1) 5 602 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa4g03437 607 SUPERFAMILY Nucleic acid-binding proteins 279 406 IPR012340 -
Vifa4g03437 607 Gene3D - 415 603 IPR012340 -
Vifa4g03437 607 CDD RPA1_DBD_A 163 266 - -
Vifa4g03437 607 FunFam Replication protein A subunit 4 112 - -
Vifa4g03437 607 CDD RPA1_DBD_C 437 602 IPR047192 -
Vifa4g03437 607 FunFam Replication protein A subunit 416 603 - -
Vifa4g03437 607 SUPERFAMILY Nucleic acid-binding proteins 429 603 IPR012340 -
Vifa4g03437 607 FunFam Replication protein A subunit 160 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03437 Vifa-Chr4 1074621356 1074624105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03437 1 602 Core DNA Replication Machinery Family AT5G08020 67.657 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03437 K07466 - mnt:21390529 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03437 4 1074621356 1074624105 Vifa4g03437 4 1074621356 1074624105 ECH