Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03434 ATGGAAAAAAACTCCTTGCCACGAACCATACGAGTAGTGAATAATCTCTTTGTAGTATATTCTATTAAGGATGCCAAGGAAACTACCATAAACCTTTATAATAATGCAAGAAAGGTCGATGGAGTTCCATTTGACGAGTCTCTCAATATGTTGTATGTTGTCAGAGTTGTTAAATCAAAACTGGAACTAATTTTCCATGTTGTGGGTCAACTGAGAGAGGAGGTAAACAAAGATGCTATCATGGGTGATGCAAGTAGAACTTCTATTCCTTCTGGCCCACTAGACTCCTATAACAAAAAGATTGTCGCGATGGTTCAACATGTCATTTATGAGCCAAATAAATTATATTGGGATATGAAGAAATCAACGGTTTTAGACTCAGACAAGCTTCAGCTAGAACGCAGGTTACGATTCACAAAAATGGCTTTCTTTGGTAAACTTGGGAGTATTCTACGACAAGCTACAAACAGGAATATTATTTCGGAATTGCGTCCGGCCCCATCGCTTTTCCAGGCTATAAGATGCTTTTGTTCTGCTCCAACCACAAAGCTATTTATTGGGGGTATTTCATATTCGACTGATGAGCCAAGTTTGAGGGAAGCTTTTTCAAGATACGGCGAAGTACTTGATGCTAGGGTGATTATGGATCGCGAAACCGGTAGATCCAGAGGATTTGGCTTTATCACATTCAATTCAGTTGAGGAGGCATCTAGTGCTATTCAAGCATTGGATGGTCAGGACCTTCATGGTCGTCGAGTTAGGGTAAATTATGCTAATGAAAGGCCTCGTGTATATGGTGGTGGCGGCGGTTCTTATGGCAATGCACCATATGGTGGTGGAGCTGGGTATGCAGGTGGTGGTGGAGGTGGCTATGGTGGAGGTTACGGTGGTGGTGGTGGTGGTGGCTATGGTGGAGGTTACGGGGGTGGTGGATATGGTGGAGGCAGCTCTGGGCCTGGAGGGAATTATGGGGGCAGTGATGCTGGCAATAACTATTCTGCTCCCAGTGGAAGTGGGGTGAGTTATGGGAATGATGGCAGTGGTGGTTTTCCTGCTGACTTTGGTGGTGCAGGTAGCGGTGCTGACTTTGGTGGTGCAGGTAGTGGTGCTGACTCTGCTGGTGGACACCTTGATAGCAATGACAGTGGCAATGTAAATGAGGATTTTGGAAATTTTAAGGATGACAATGATGATGACACTGATAATTTTGCCAAAAGGGTCTGA 1224 0.4436 MEKNSLPRTIRVVNNLFVVYSIKDAKETTINLYNNARKVDGVPFDESLNMLYVVRVVKSKLELIFHVVGQLREEVNKDAIMGDASRTSIPSGPLDSYNKKIVAMVQHVIYEPNKLYWDMKKSTVLDSDKLQLERRLRFTKMAFFGKLGSILRQATNRNIISELRPAPSLFQAIRCFCSAPTTKLFIGGISYSTDEPSLREAFSRYGEVLDARVIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANERPRVYGGGGGSYGNAPYGGGAGYAGGGGGGYGGGYGGGGGGGYGGGYGGGGYGGGSSGPGGNYGGSDAGNNYSAPSGSGVSYGNDGSGGFPADFGGAGSGADFGGAGSGADSAGGHLDSNDSGNVNEDFGNFKDDNDDDTDNFAKRV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03434 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 254 IPR000504 GO:0003723
Vifa4g03434 407 PRINTS Eggshell protein signature 178 194 - -
Vifa4g03434 407 PRINTS Eggshell protein signature 312 322 - -
Vifa4g03434 407 PRINTS Eggshell protein signature 285 300 - -
Vifa4g03434 407 PRINTS Eggshell protein signature 356 374 - -
Vifa4g03434 407 MobiDBLite consensus disorder prediction 361 407 - -
Vifa4g03434 407 CDD RRM2_NsCP33_like 183 258 - -
Vifa4g03434 407 Gene3D - 153 277 IPR012677 -
Vifa4g03434 407 SMART rrm1_1 183 256 IPR000504 GO:0003723
Vifa4g03434 407 SUPERFAMILY RNA-binding domain, RBD 178 273 IPR035979 GO:0003676
Vifa4g03434 407 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 141 345 - -
Vifa4g03434 407 MobiDBLite consensus disorder prediction 388 407 - -
Vifa4g03434 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03434 Vifa-Chr4 1072999285 1073004667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03434 182 270 Eukaryotic Initiation Factors Gene Family AT4G34110 34.831 3.13e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03434 K12741 - gmx:100799124 202.601