Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03431 ATGGCATCGGCGAAGCGATGCCACTACGAAGTTCTTGGTCTCTCCCAAGACTCTTCGCCAGAAGAAATCCGATCCGGTTACCGGAAGCTCGCCCTCCAACGCCACCCAGACAAGCTCGTCAAATCCGGCCTCTCTCAAGCTGAAGCGACCGCACAATTTCAGGAGCTACAGCACGCCTACGAAGTCCTCTCCGATCCAAAGGAACGCGCTTGGTACGATTCTCATCGTTCCCAAATCCTCTTCTCCGATCCAAATTCGCACTCTAATTCCGTTGTCCCTGACCTCTTCTCATTTTTCTCGAACACCGTTTATTCTAACTATACCGATACCGGTAAGGGTTTTTACAAGGTTTATTCCGATGTATTTGATAAAATTCTCGCCAATGAGATCAATTTCGCTAGGAAATTAGGTTTAGGAGTTGATTCTGTTAGGCAGGCTCCGCTTATGGGGAATTTGGATAGTCCTTATACGCAGGTTACCGCTTTTTATGGTTACTGGTTGGGATTTTCGACGGTGATGGATTTTTGCTGGGCGGATGAGTATGATGCGATGGCGGGTCCAAATAGAAAGTCGAGGCGGTTGATGGAGGAAGAGAATAATAAGGTGAGGAGGAAGGCTAAGAGGGAGTATAATGATACGGTGAGGAGGTTGGCTGATTTTGTGAAGAAGAGAGATAAGAGAGTGATTGATATGAAGGTGAAGAAGAATTTGGAGATGGAGAAGAAGAAAGAGGAGGAGAAGGAGAGAAAGAGGAAGTTGGAGATGGAGAAAAAGGAGAGGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGATGATGAAGAAGTTGAGGATTTGTTTGAGGATGATGAGTTTGAGGAGAAGAAAGACGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAAAACCATGAGCAGTCTAAGAAACATAAGGAGAAAGTTGCTGAGTTTAGGGATTCACTCGATGATGAAGAGGATATAGAAGCTGAGGATGGAAGTGGGGTTGATGACTTGGAGGAGAGGATTCAAGATTGTCTTGATATTGCAGAAGAAGAGAGTGTAAATAGGGTTGAACTGAATGATGATGATGATGATGACATTGATGATGGAAATGATGAATTTTTTGATGCTTCAAATGCAAAAGAGGGGGGAGAGAATGGTGTATCAATTGATTTCGATGACAATAATGACGATGGAGATGATGAAATTGGTGTTCTTGAAACAATGTTGGCAGGGCACAAGAAAAGAGTTGATTTTGATGAGAATGATGATGAAGATGATGAGATTGATATTCTTGAAGCATTGCTGGCTGGGCGCAAGAGCAGTAAATCTGGTGCTTCAAATCACAAGCCCGCAGTTTCTGTAACTCCAACTCAAATTGAGAGTGAGAGTGAGAATGATAGGGTTGGTGCTATGGAATATAACAACCGAAAGATCCCAAAAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTGGGAAAAATGGGGCCGAATCCAATGTGCCTACCAATGGAAAATATGAGAAGAATATACACACTAATGGAAATGATGATTCTAATGCACAAGAGTCTAGTTCCCAATATTTCGATGGTAACGAGGATAATGGGAGTAAAGAGAATGAGGAGCTGGGTAGAGATAATAAGAAAGGAACTTCAAAGGACACAAAAACCAAAGCAAAAATTTCATCCAAAGGAAGAAAAGCAAAGAATACTTCAAAGAATCTTGGCCATTTCTGTGAGACGTGTGGAGAGGATTTTGAGTCAAGGAATAAATTACATAGGCATCTGGGAGAATCCGGGCACGCAGCAATAAAAAGTCGATAA 1848 0.4275 MASAKRCHYEVLGLSQDSSPEEIRSGYRKLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSHSNSVVPDLFSFFSNTVYSNYTDTGKGFYKVYSDVFDKILANEINFARKLGLGVDSVRQAPLMGNLDSPYTQVTAFYGYWLGFSTVMDFCWADEYDAMAGPNRKSRRLMEEENNKVRRKAKREYNDTVRRLADFVKKRDKRVIDMKVKKNLEMEKKKEEEKERKRKLEMEKKERAMAYEEPDWAKVDDEEVEDLFEDDEFEEKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDDEEDIEAEDGSGVDDLEERIQDCLDIAEEESVNRVELNDDDDDDIDDGNDEFFDASNAKEGGENGVSIDFDDNNDDGDDEIGVLETMLAGHKKRVDFDENDDEDDEIDILEALLAGRKSSKSGASNHKPAVSVTPTQIESESENDRVGAMEYNNRKIPKKKRRAKKEKGGKNGAESNVPTNGKYEKNIHTNGNDDSNAQESSSQYFDGNEDNGSKENEELGRDNKKGTSKDTKTKAKISSKGRKAKNTSKNLGHFCETCGEDFESRNKLHRHLGESGHAAIKSR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03431 615 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 324 IPR013087 -
Vifa4g03431 615 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Vifa4g03431 615 Gene3D Classic Zinc Finger 284 344 - -
Vifa4g03431 615 ProSiteProfiles Zinc finger C2H2 type domain profile. 585 614 IPR013087 -
Vifa4g03431 615 SMART dnaj_3 6 68 IPR001623 -
Vifa4g03431 615 MobiDBLite consensus disorder prediction 448 587 - -
Vifa4g03431 615 Pfam DnaJ domain 8 73 IPR001623 -
Vifa4g03431 615 Coils Coil 229 259 - -
Vifa4g03431 615 SUPERFAMILY Chaperone J-domain 4 101 IPR036869 -
Vifa4g03431 615 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Vifa4g03431 615 MobiDBLite consensus disorder prediction 365 382 - -
Vifa4g03431 615 SUPERFAMILY beta-beta-alpha zinc fingers 287 341 IPR036236 -
Vifa4g03431 615 SMART c2h2final6 585 609 IPR013087 -
Vifa4g03431 615 SMART c2h2final6 295 319 IPR013087 -
Vifa4g03431 615 MobiDBLite consensus disorder prediction 307 347 - -
Vifa4g03431 615 Gene3D DnaJ domain 1 91 IPR036869 -
Vifa4g03431 615 MobiDBLite consensus disorder prediction 450 474 - -
Vifa4g03431 615 ProSitePatterns Zinc finger C2H2 type domain signature. 587 609 IPR013087 -
Vifa4g03431 615 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 425 IPR044648 -
Vifa4g03431 615 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Vifa4g03431 615 PRINTS DnaJ domain signature 9 27 IPR001623 -
Vifa4g03431 615 PRINTS DnaJ domain signature 27 42 IPR001623 -
Vifa4g03431 615 PRINTS DnaJ domain signature 48 68 IPR001623 -
Vifa4g03431 615 CDD DnaJ 7 65 IPR001623 -
Vifa4g03431 615 MobiDBLite consensus disorder prediction 330 344 - -
Vifa4g03431 615 MobiDBLite consensus disorder prediction 307 329 - -
Vifa4g03431 615 MobiDBLite consensus disorder prediction 505 541 - -
Vifa4g03431 615 MobiDBLite consensus disorder prediction 542 569 - -
Vifa4g03431 615 MobiDBLite consensus disorder prediction 365 408 - -
Vifa4g03431 615 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Vifa4g03431 615 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03431 Vifa-Chr4 1071343605 1071345960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03431 3 615 C2H2 Transcription Factor Family AT1G74250 50.149 2.44e-180 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa4g03431 DnaJ 4.7e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03431 K09506 - gmx:100788305 747.273