Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03422 ATGGCAATAAAGTCTAACTGTAACATTAAATTAGAATATGATATGGTTCAGACAAAGCAAGATTGCTTATGTGTTTTGGTTTCTTTCAACCAAAGTTCTTGCTGGAAGAAGAAGCTTCCACTATCTTATGGAAGAAATGATCAAGTAGTAAAAGGAATTTTTGTCATGAAATTGATGAAAAACGATCCTTTTTCTTCCATTTCAAATCAAAAGAAAGATCATGAAACTTTGATTATTGTAATTTCGGTTCTTTTAGGAAGCTCTATGCTTGTCATTGTGACATTACTTGGAGCAATGTTTTTTGGGTTTCCTTACAACCTCAAGAAGATAAAAAGTTGTAGAACCAACAAAAATGTTGTTGACAATAACTTGCGCAATTTTAGCTTCAAGGAAATCGTTGAAGCAACGAGTAACTTCAGAGAGGAACTTGGAAGAGGGTCTTGTAGCGTTGTGTACAAAGGAACAATAGATATGATGGTTGATGTAGCCGTTAAGAAACTTGATAAGTTGCTTCAAGATAGTGATAAGGAATTTCAGACCGAAATGAGTGTGATAGGACAAACTCATCACAGAAACCTTGTTCGTCTTCTTGGATATTGCAATGAGGAACAACATCGGATTTTGGTTTACGAGTTAATGAGCAACGGAACTTTAGCAAGCTTCCTTTTCACCTCTTTAAAACCAAATTGGAACCAACGATTCCAAATTGTTCTTGGAATTGCTAGAGGTCTTGTATACTTGCATGAAGGATGTTGCACCCAAATCATCCATTGTGATATTAAACCCCAAAATATACTTCTAGATGATCACTACAATGCTAGGATTTCAGATTTTGGGTTAGCAAAGCTATTGCTGATTAATCAGAGCCACACCGAAACTGGAATTAGAGGAACCAAAGGGAAAAATGTAGAGAAGGAATTTGTTAATGAAGAACAAGGGATTTTAACTGATTGGGCTTATGATTGCTATAAGACTAAAATACTTGACAATCTCTTAGAAAATGATAATGAGGTCGGAAATGACATGATGAGTTTGGAAAAGTTAGTCATGATTGTTATTTGGTGTATTCAAGAAGATCCTTCTCTTAGGCCAACAATGAAGGAGGTTTTACTGATGTTAGAAGGAATAGTCGAAGTTGTTGTTCCCCGAAGTCCCTATCTTTATGGTTCTGTAAGTTGTAATTAA 1185 0.3527 MAIKSNCNIKLEYDMVQTKQDCLCVLVSFNQSSCWKKKLPLSYGRNDQVVKGIFVMKLMKNDPFSSISNQKKDHETLIIVISVLLGSSMLVIVTLLGAMFFGFPYNLKKIKSCRTNKNVVDNNLRNFSFKEIVEATSNFREELGRGSCSVVYKGTIDMMVDVAVKKLDKLLQDSDKEFQTEMSVIGQTHHRNLVRLLGYCNEEQHRILVYELMSNGTLASFLFTSLKPNWNQRFQIVLGIARGLVYLHEGCCTQIIHCDIKPQNILLDDHYNARISDFGLAKLLLINQSHTETGIRGTKGKNVEKEFVNEEQGILTDWAYDCYKTKILDNLLENDNEVGNDMMSLEKLVMIVIWCIQEDPSLRPTMKEVLLMLEGIVEVVVPRSPYLYGSVSCN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03422 394 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 301 382 - -
Vifa4g03422 394 Gene3D Transferase(Phosphotransferase) domain 1 301 383 - -
Vifa4g03422 394 SUPERFAMILY Protein kinase-like (PK-like) 129 382 IPR011009 -
Vifa4g03422 394 Gene3D Transferase(Phosphotransferase) domain 1 213 300 - -
Vifa4g03422 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vifa4g03422 394 FunFam Os07g0541700 protein 213 298 - -
Vifa4g03422 394 SMART serkin_6 137 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03422 394 Gene3D Phosphorylase Kinase; domain 1 104 212 - -
Vifa4g03422 394 ProSiteProfiles Protein kinase domain profile. 137 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03422 394 Pfam Protein kinase domain 140 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03422 394 FunFam S-receptor-like serine/threonine-protein kinase 107 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03422 Vifa-Chr4 1068294843 1068296106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03422 69 378 Receptor kinase-like Gene Family AT5G45780 34.758 6.17e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g03422 Pkinase 5.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03422 - - mtr:25487002 640.958