Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03399 ATGGGTTGTGTGTTTGTGAAGCAAGGGGTGTCTGTGACACCTGCGGTTGACCACTCTGTTGACTCTGAGAGAAATAGTAGTAGTATTACTAACAAGAATAAGAACAAGAAGAAAGCTAGTGCTGAGTTAGTTGGATTGAGTTGGAGCGAGTTGGGTGAGTCGGGGAGAACGAGTTTGAATGGTGGAAACGAGTCTCTGAGTTTCAGGTTAGGGAATCTTGGTAAGTATGTGGAGAGAGAACAAGCTGCTGCTGGTTGGCCGGCTTGGCTTAGCGCGGTTGCTTCTGAAGCTATTCATGGTTGGGTTCCTCTCCGTTCTGATGCATTTGAAAAACTTGACAAGATTGGGCAGGGAACATATAGTAGTGTTTTCAGAGCGAAGGAGATTGAGACGGGGAAGATAGTGGCTTTAAAGAAGGTGAGATTTGACAATTTTGAGCCGGAAAGTGTGCGGTTTATGGCAAGAGAAATTATGATTCTTAGAAGACTTGATCATCCCAATATCATTAAACTGGAGGGTTTGATTACTTCAAGGCTGTCTTGTAGCATTTACCTTGTATTTGAGTACATGGAGCATGATGTCACAGGGCTCTTGTCTAAACCAGATATCAACTTTACTGAATCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGTCTAGAGCACTGTCACTCGAGAGGTGTAATGCATCGAGACATCAAAGGATCGAATCTTCTTGTGAATAATGAAGGGATATTAAAGGTAGCTGATTTTGGATTGGCGAATTTCTGTAATTCCGGGAGCAAACAGCCGCTCACGAGCCGTGTTGTCACATTATGGTACCGTCCTCCAGAGCTATTGCTTGGTTCAACAGATTACGGTCCGTCTGTGGATATTTGGAGTGTTGGTTGTGTATTTGGAGAGTTTCTAGTTGGGAAGCCTATACTTAAGGGGAGAACAGAGGTTGAACAGTTGCACAAAATCTTCAAGCTTTGTGGCTCTCCACCGGATGAATACTGGAAAAAGACCAAACTACCTCACGCAACTTTGTTCAAGCCACAGCAACCATATGATAGTTGCCTAAGAGAAACATTTAAAGATTTTCCTGCAACCAGTGTAAATTTGTTACAAAATCTTCTTTCTATAGAACCCAACAGACGCGGAACCGCCTCATCTGCTCTCTCATTGGAGTATTTCAAAACAAAACCTTATGCCTGTGATCCGTCAAGCTTACCAGTATACCCGCCTAGCAAAGAGATCGATGCAAAACACGACGAGGAGACAAAAAGGAAAAAGATTGCTGGGCGAGTTTGTGGACCTGAAAAAAGAAGATCGTCGAGAAAGCCAGTAGGGCTGAGTAAATTACCACTACCAGAGGATTTGACAAGTCAAATTCGAACTTCACAGAAGAAAGACGATATATCTGTCCAAGTCCTTAAAGAAGAGAACATTAACACAGGCGACGAGGCATCAAAGCCATCCGGTGGTAAACCAGAAGACGCTTCTGATATGAAGAATGCATCTCAAGTTGATATTCCCTTTCATGGACCATTACAAGTTTCAAAATCAAGTGGATTTGCATGGGCAAAAAGGCGTAAAGATGATGCTACTTCAATTAGATCCCACACTCGATCTATATCTAAAGGACATATATTTAATTCATTAGAAACTTCTACACAAAATTCAAGGAATATTTCTGATGATAATGAAAACAATGAAAATAAGGAAGTTTTCGGAGGACGAACCAGCTCTAGAGGCCACGACGTATTTGAAATTTCTAAGCTAGTGGTGCAAAATCAATGGAGTAAGTTTGATCGCCCGGATTCGTTTGATACTTGTGATGAGTACCACTCACAAGAACTGTCTATGATGGTTTATCATAGAGAAGATTCACTGTCCAAGAGAAGTAATCGAAGTTATCAGGATCAAGGAGAGAAGGTTGAATTTTCAGGGCCCCTAATATCTCAAATGCATACAGTTGATGAGCTATTAGAAAGACATGAGCGCCACATTCGGCATACAGTTCGAAGATCATGGTTTCAGAGAGGTAAGAAGCATGGAAATTAG 2049 0.4173 MGCVFVKQGVSVTPAVDHSVDSERNSSSITNKNKNKKKASAELVGLSWSELGESGRTSLNGGNESLSFRLGNLGKYVEREQAAAGWPAWLSAVASEAIHGWVPLRSDAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDVTGLLSKPDINFTESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNSGSKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFGEFLVGKPILKGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYDSCLRETFKDFPATSVNLLQNLLSIEPNRRGTASSALSLEYFKTKPYACDPSSLPVYPPSKEIDAKHDEETKRKKIAGRVCGPEKRRSSRKPVGLSKLPLPEDLTSQIRTSQKKDDISVQVLKEENINTGDEASKPSGGKPEDASDMKNASQVDIPFHGPLQVSKSSGFAWAKRRKDDATSIRSHTRSISKGHIFNSLETSTQNSRNISDDNENNENKEVFGGRTSSRGHDVFEISKLVVQNQWSKFDRPDSFDTCDEYHSQELSMMVYHREDSLSKRSNRSYQDQGEKVEFSGPLISQMHTVDELLERHERHIRHTVRRSWFQRGKKHGN 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03399 682 MobiDBLite consensus disorder prediction 17 36 - -
Vifa4g03399 682 MobiDBLite consensus disorder prediction 18 34 - -
Vifa4g03399 682 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vifa4g03399 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vifa4g03399 682 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Vifa4g03399 682 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Vifa4g03399 682 MobiDBLite consensus disorder prediction 544 577 - -
Vifa4g03399 682 MobiDBLite consensus disorder prediction 517 536 - -
Vifa4g03399 682 CDD STKc_CDK9_like 109 393 - -
Vifa4g03399 682 FunFam probable serine/threonine-protein kinase At1g54610 192 432 - -
Vifa4g03399 682 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03399 682 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Vifa4g03399 682 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03399 682 MobiDBLite consensus disorder prediction 412 499 - -
Vifa4g03399 682 MobiDBLite consensus disorder prediction 521 535 - -
Vifa4g03399 682 PANTHER CELL DIVISION PROTEIN KINASE 107 397 - -
Vifa4g03399 682 MobiDBLite consensus disorder prediction 544 561 - -
Vifa4g03399 682 SUPERFAMILY Protein kinase-like (PK-like) 103 400 IPR011009 -
Vifa4g03399 682 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03399 682 MobiDBLite consensus disorder prediction 412 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03399 Vifa-Chr4 1060576169 1060579305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03399 101 425 Core Cell Cycle Gene Families AT5G10270 51.026 4.77e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa4g03399 Pkinase 7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03399 - - gmx:100816047 1122.84