Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03397 ATGGCGCTGTTCAGAAGGTTCTTTTACCGGAAGCCGCCGGATCGCCTTTTGGAGATCTCTGAGAGGGTTTATGTTTTTGATTGTTGTTTCTCCACGGACGTATTGGAAGAAGGTGAGTACAAAGTTTATATGGGGGGAGTTGTGGCTCAGCTACAAGATCACTTTCCGGAAGCTTCTTTCATGGTGTTCAACTTCAGAGAAGGGGAGAGGCGAACCCAAGTCTCAGACATACTTTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGTCCTCTTCTGCCTTTAGAGATGATCCATCACTTTCTTCGATCAAGTGAAAGCTGGTTGTCTGTGGAAGGGCAACAGAATGTGCTTTTGATGCATTGTGAGAGGGGAGGATGGCCTGTGCTGGCATTCATGCTAGCAGGTCTTCTGTTGTACCGGAAACAGTACAGCGGGGAGCAAAAGACTCTTGAAATGGTCTACAAGCAAGCTCCCAGAGAACTGCTCCACCTTTTAACTCCGTTGAACCCACAACCTTCTCAGTTCAGATATCTTCAGTATATTTCCAGAAGACATCTGGGTTCTGAGTGGCCGCCGTCAGACACACCCTTGTACCTGGATTGTCTGATTCTTAGAGACCTCCCTTTATTCGATGATGGAAAAGGTTGCAGACCTGTTGTGCGTGTTTATGGTCCGGACCCTTCAAAACCTGCCAATAGAAGTTCGAAGCTTCTTTTCTCAACCTCAAACTCCCTAAAGCATGTTCGACACTATCAACAGGCAGAGTGTATGCTTGTGAAAATTGATCTCCGTTGTCGTGTTCAAGGAGATGTGGTTCTTGAGTGCATAAATTTAAACGAAGATTCTACTGGTGAGGAGGTGATGTTTAGAATTATGTTCCATACTGCATTTGTGCGGTCAAATATATTGATGCTGAGCCGTGATGAAATTGATATTTTGTGGGATGCTAAGGATCAATACCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTGAACACAGTAACGGCGGCGAGTCAAGATGCAAATGAAACAGAAAATGCTTCACCTGAGGAATTCTATGAAGTGGAAGAGATTTTCAGCAATGTGGTTGATGTGCAGGAAAGTAAGGCAGAGGATAATTCTCAAACTTTTCATGACAATGCAGTGAATGATGGAAATCATAAAAGGATCTGGAGGGAGGATTCAGGTCCTCACGCTTTTCAGGATTGCACGCCAGATGATGGGATTCACACACAGGTTGGAAAGATGGATTCCGGTATTAATGATGTGAAAGATATCTCTGTTGATGATGTTAACTGCAAGTTCAATGCGAGCACGGATTCGGATCCTCAGGCAGTGAAGGACATTGCCATGGATGATGGAGAAATTAAGTCAAATTCCACTGCCATAAATTATGATATGATGATACCTTTGGAAACAAAGGAAATCATTGAGGATGCTGATCGGGGATCAGCAATTATGCAGGACAAATATGATGAAGATAACGAGGCAACAGAGAAGGAATTAGATTACAAGGAAGGGCAGCCCATGCCTGATAGTTCCAAACAAAAATCTGGTAAACTACCTCCATCTACTGCTAAGAAACAAATTCCATCAAACTCAAAGCCAGGAGATACTGTTGGAAAACAAAAGGTTAAAGAAACCACTGCTTTTCAGGCAAAACAAGCTAAACCAACTGCAGTGACGAGGTGGATTCCTTCTAACAAGGGTTCTTACACAAATTCAATGCATGTGTATTATCCACCAACAAGGATTAATAGTGCACCACCTGGACTGTCAAATATAACCACTTCAAAGGAGAAAATGGACGATAACAAAACAAGATCCTTAGCTGCTCCTTTTGGCTCTGCAGCAGCTGTTTCTGCTGACATGAAAAATGACCTGAAAAGTCGGAAGGTGACCACTTCAAAATCTTTCGGCCAAGTAGTATCAGAAATTGATGCAAAATGTCCATTATCGCCGCCATCAGTTAAAGAGACATCTCTTAAGTCAGTAAGTCAAGTACAAGAGCAGAGCTCAGAGCAATTGCTACAACCTCTTGCACTGCGTCCTATTCCTCCTCCTCCTCCACCACCTTTGCCACCATCCTTTTCATCATTTAGTAGACAAGACATTAGGGTGAATTTACAACCTGCAACTTCTCCCCCACCTCCACCTCCGCCACCACCTCAACCCTCATGGAAGTCTGTGGCTTCATCGATAGTTGGAGAGACTCGTGGTTCTTTCCCACTCTCTCCACTCGCCCTTCCCTTTGCAAGCAATGGAATTACATCAAAATTTTCTGAAGTACCTACTGAAGTGGCTCCATCAAGGCCTCCTCCACCACCACCACCACCACCACCACCACCAATCCTCCCTCCATGGCACGAAGTTTCAACCGTTCCTCTACTACCATCAACAGTACCTCCTGCAAAGCATGGAGTTTCATCAATTCCTCCTCCTCCTCCTCCCCCCTCATTTCCTATGTCTTCAACAAACATGTCTCCAATCCCGCCACCTACAACTACATCTCAAAAAGCTCCACCCCCACCTCCACCTCCACCTCATCCACCCTTTGTTAATTCATATACAAGTTCACCTGCACCACCTCTATCTCCAACTCCTTTTCGTAAGGCTCCATCACCTCCGCCTCCACCTCCTTTTACTAATGCTCCAACAGAAATGCCTCCACCACCACCTCCACCACCACCTTTTACTAGGACTCCACCAGCACCACCCCCACCTCCTCCACTCCCTTTTAGTACATCTCGGTCTGCACCCTCTCTTTTTACTAGAGCTCCACCACCCCCACCCCCACCTCTTCATTTATTGGGTGGATCCCCACCTCCACCTCCACCTCCACCTCCTCCAGTGTCTAGAGCCCCTCCCCCTCCACCTCCTCCATTGTATGGAGCCCCTCCTCCTCCTCCTTCTCCTCCATTGTATGGAGCCCCTCCTCCTCCACCTCCTTCGATGTCTAGAGCCCCTCCACCTCCTCCGACGCATGGAGCACCACCACCACCACCACTTCCCGGTGGTCGAGGACCACCACCACCACCACCACCTCCCGGTGGCCGAGGCCCGCCACCACCACCACCACCTCCTGGTGGCCGAGGAGGCCCACCTCCACCCCCTCCTCCTGGTGGTCGAGGAGGCCCACCTCCTCCACCTCTTCCTGGTGGTCGAGGCCCGCCTCCACCTCCTCCTCCTGGTGGTCGAGGAGGCCCGCCTCCACCTCCTCCTCCTGGTGGTCGAGGAGGCCCACCTCCTCCACCTTTTCCTGGTGGTGCACCTCCACCACCTCCGCCCTTGGGTTCTAAAGGTGCAAATGTTGGAGCTGACCCAAATGGGAGAGGGCGTGGATATGCCCGCCCTGCTGCAGTGGCACCCCGGCGATCCTCCTTAAAGCCTTTGCATTGGAGTAAGGTTACAAGGGCATTGCAAGGAAGTTTATGGGAGGAATTACAAAGACATGGAGAACTGCAAATTGCACCAGAGTTTGATGTTTCGGAGCTAGAGAAACTTTTCTCTACAAATGTTCCAAAACCCACCGATTCAAAATCTGGAGGGAGGCGCAAGTCTACTGGATCTAAACCCGATAAAGTTCAATTGGTTGACCTAAGGAGGGCTAATAATACGGAAATCATGCTTACTAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTAGCTTTGGATGAGTCAGTATTAGATGTTGATCAGGTGGAAAATCTCATTAAGTTTTGTCCTACCAAAGAGGAAATGGAACTTTTGAAGGCATACACCGGCAACAAGGAGAATTTGGGAAAGTGTGAGCAGTTTTTTTTGGAGCTGATGAAGGTGCCAAGGGTGGAGTCAAAGTTAAGAGTTTTCGCTTTCAAAATTCAGTTTCAGGCTCAGGTTACCGAATTTAGGAAGAGTTTAAACACGGTAAACTCTGCCTGTGAAGAGGTCCGGAAATCTACCAAACTGAAGGATATCATGAAGAAAATTCTTTTTTTGGGTAATACATTGAATCAGGGAACTGCCAGGGGATCTGCAGTTGGATTTAAGTTGGATAGTCTTTCAAAGCTCACCGACACTCGTGCTACTAACAATAAGATGACACTAATGCATTATCTCTGCAAGGTGCTAGCTGAAAGGTCTCCTGGACTCCTTGATTTTCACAAAGACCTTGTTAGTCTGGAAGGCGCCACTAAGATACAATTGAAATCATTAGCTGAAGAGATGCAGGCAATCACCAAGGGATTAGAGAAGGTTAAACAAGAGCTTGCTGGATCAGAAAATGATGGACCTGTGTCCGAAGTTTTCCGTAAGACATTGAAAGGATTCATTACTGTAGCTGAATCAGATGTGGCAGATCTGACAAAATTATATTCTACAGTGGGTAAAAATGCTGATGCACTTGCACTGTATTTCGGTGAGGAGCCTTCTCGATGCCCATGTGAGCAAGTTACTGCAACTCTATTAAATTTCATAAGGTTGTTCCGAAAAGCACATGAAGAGAATTGCAAACAAGCAGAACTAGAGAAAAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCTAAGGGCGTTAACTTAACAAAAAAGAGTGGAAAAGATAGTTGA 4641 0.4678 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEGEYKVYMGGVVAQLQDHFPEASFMVFNFREGERRTQVSDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSVEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPRELLHLLTPLNPQPSQFRYLQYISRRHLGSEWPPSDTPLYLDCLILRDLPLFDDGKGCRPVVRVYGPDPSKPANRSSKLLFSTSNSLKHVRHYQQAECMLVKIDLRCRVQGDVVLECINLNEDSTGEEVMFRIMFHTAFVRSNILMLSRDEIDILWDAKDQYPKDFKAEVLFLDADAVIPDLNTVTAASQDANETENASPEEFYEVEEIFSNVVDVQESKAEDNSQTFHDNAVNDGNHKRIWREDSGPHAFQDCTPDDGIHTQVGKMDSGINDVKDISVDDVNCKFNASTDSDPQAVKDIAMDDGEIKSNSTAINYDMMIPLETKEIIEDADRGSAIMQDKYDEDNEATEKELDYKEGQPMPDSSKQKSGKLPPSTAKKQIPSNSKPGDTVGKQKVKETTAFQAKQAKPTAVTRWIPSNKGSYTNSMHVYYPPTRINSAPPGLSNITTSKEKMDDNKTRSLAAPFGSAAAVSADMKNDLKSRKVTTSKSFGQVVSEIDAKCPLSPPSVKETSLKSVSQVQEQSSEQLLQPLALRPIPPPPPPPLPPSFSSFSRQDIRVNLQPATSPPPPPPPPPQPSWKSVASSIVGETRGSFPLSPLALPFASNGITSKFSEVPTEVAPSRPPPPPPPPPPPPILPPWHEVSTVPLLPSTVPPAKHGVSSIPPPPPPPSFPMSSTNMSPIPPPTTTSQKAPPPPPPPPHPPFVNSYTSSPAPPLSPTPFRKAPSPPPPPPFTNAPTEMPPPPPPPPPFTRTPPAPPPPPPLPFSTSRSAPSLFTRAPPPPPPPLHLLGGSPPPPPPPPPPVSRAPPPPPPPLYGAPPPPPSPPLYGAPPPPPPSMSRAPPPPPTHGAPPPPPLPGGRGPPPPPPPPGGRGPPPPPPPPGGRGGPPPPPPPGGRGGPPPPPLPGGRGPPPPPPPGGRGGPPPPPPPGGRGGPPPPPFPGGAPPPPPPLGSKGANVGADPNGRGRGYARPAAVAPRRSSLKPLHWSKVTRALQGSLWEELQRHGELQIAPEFDVSELEKLFSTNVPKPTDSKSGGRRKSTGSKPDKVQLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDESVLDVDQVENLIKFCPTKEEMELLKAYTGNKENLGKCEQFFLELMKVPRVESKLRVFAFKIQFQAQVTEFRKSLNTVNSACEEVRKSTKLKDIMKKILFLGNTLNQGTARGSAVGFKLDSLSKLTDTRATNNKMTLMHYLCKVLAERSPGLLDFHKDLVSLEGATKIQLKSLAEEMQAITKGLEKVKQELAGSENDGPVSEVFRKTLKGFITVAESDVADLTKLYSTVGKNADALALYFGEEPSRCPCEQVTATLLNFIRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGVNLTKKSGKDS 1546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03397 1546 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 938 1114 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 782 804 - -
Vifa4g03397 1546 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vifa4g03397 1546 Pfam Formin Homology 2 Domain 1139 1506 IPR015425 -
Vifa4g03397 1546 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1133 1532 IPR015425 -
Vifa4g03397 1546 Coils Coil 1507 1541 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 726 742 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 526 613 - -
Vifa4g03397 1546 FunFam Formin-like protein 1132 1518 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 503 525 - -
Vifa4g03397 1546 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Vifa4g03397 1546 PANTHER FORMIN-J 1049 1541 - -
Vifa4g03397 1546 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 1523 1546 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 672 693 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 1194 1208 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 696 712 - -
Vifa4g03397 1546 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1146 1526 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 822 930 - -
Vifa4g03397 1546 SMART it6_source 698 1545 IPR015425 -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 644 1141 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 503 620 - -
Vifa4g03397 1546 SMART PTEN_C2_2 198 338 IPR014020 -
Vifa4g03397 1546 Gene3D Formin, FH2 domain 1131 1518 IPR042201 -
Vifa4g03397 1546 Gene3D - 205 336 - -
Vifa4g03397 1546 Coils Coil 1413 1440 - -
Vifa4g03397 1546 MobiDBLite consensus disorder prediction 1186 1208 - -
Vifa4g03397 1546 CDD PTP_PTEN-like 16 190 - -
Vifa4g03397 1546 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03397 Vifa-Chr4 1059329307 1059338443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03397 1 613 FH2 protein (formin) Gene Family AT5G07740 62.903 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03397 - - psat:127073762 1496.49