Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03394 ATGAAACATTCATATAATTTCTTTTCCCTCTTTATTCTCCTTCTTCTTCATCTCTTCTTTATTCCATCAACATGTGTTTACAATTCCATTAATGATTCTGATTTTGGTTCTTCTTTTACACCTTCTGTTAATTATCTTATTGATTGTGGCTCCTCCCTTAAAACTCAACTACGAGACGGTAGAATCTTTAAATCTGATCCTGACACCACTTCTTTTCTTTCAACAACAGAAGATATTCAAATTTCAGTTGATTCTATTAACCTAGCAAATCTCTCTTATTCACCTGCACTACCTTTATATGAAACTGCTAGGGTTTTCACAGAAGATACTACATACAGTTTTTACATCCCCAAACCTGGTAGACTTTGGATTCGTCTTTACTTTTTTCCTCTTCCTAACCCTTCATACAATCTATCTAGTTTTGTTTTCTCGGTTCATACCGATCACTTTGTGCTCTTGCATGAATTCTCTCAAAGTAATAATGATTCACTAGTTTTCAAGGAATATCTTCTCAATGTGTCTGATCATAGATTTTCTCTCAAGTTCAAGCCGAGGAAAAGTTCGTCTGCGTTTATCAATGCAATTGAAATTGTTTCAGCTCCTGATATACTTTTATCAGATTCAGCTATTCAAGTTTCTCCGCCGCTTGGGAAATTCAATGGTTTGATGAACTCAGCTTTGCAAGTTTCTTATAGAATAAATGTTGGTGGCCCGACAATAACTCCTGGAAATGACACCTTGTCAAGAACTTGGGAGTCTGATGATCCATACAATATTTTTCCACAAGGCTCTAAGAGTGTTTCTGTCTCTAACAAGAGAATAATATATCCACAAACAAGTGATTTTATTGTCACACCCTTGATTGCTCCGAGTCCGATTTATGCAACTTGTGTAGAAATGGAGGATCCTCAAGTTATGCAGCCAAATTTCAATCTTAGTTGGATGGTGAATGTGGAAAAAAAATACTCTTATTTGATAAGAATGCATTTTTGCGACATTGTTAGTAGAAGGCTTGATCAGTTGTATTTCAATGTGTACATCAATGGGATTGAGAGTGTGTCAGCTTTGGACCTTTCATACGAAACCAAAGCTCTAGCAACAGCTTATTACATGGACTTTATGATTGGTTCATCTAATATCACAAACGGTTCTATCCTGATTCAGGTAGGACCGACGAATCATAAACAAGACATATCCAATGCAATTTTGAATGGAATTGAGGTGATGAAAATGAGCAATAGTGCTGATAGTTTGGATGGTTTTTTCTCTGTTGATGGAGAATACAAAGGACCGAATTTAAGAACAAAGCTAATGAAACTTGTTGCTATTATTGGATTTTCTTTGGCTGTGATATCATTGTTGTTACTAGGAGTGATGTATGTTAGGTGGTTAAGGAGGCCTTTATGTCGGGAAGAAAGTAGAAATTTCTTTTCGTGGCTCTTACCTCTTCATTCAAAATGTAACATCAGTTGCAGCATATATTCAAACAAATATGATTCACCTAAGAGCAAGCATGCTGGTGGTCATTCTATTCATCACTCTCCAAGAAGAGGGTCCAAAAGGTTCTTTCATTTCATCGAATTGCAACGAGCCACGGGCAATTTCGATGAAAAGAAAGTTCTTGGTGTTGGAGGCTTTGGTAAAGTGTACCTCGGAACGTTGGACGATGGAAGACGTGTTGCTATAAAAAGAGGAAGTGGTAGTTCAGGACAAGGGATGAATGAGTTTATAACAGAACTTAACATGCTTTCAAAACTGCGCCATCGCCACTTAGTTTCACTAGTAGGTTTCTGTGATGAAAACTCAGAGATGGTTCTTGTATATGATTATGTCTCTAATGGCCCTTTTCGTTCGCACCTTTATGGCTCCAACTTTTCTCCTTTGTCATGGGAAAAGAGGCTTGAGATTTGCATCGGTGCTGCTCGCGGTTTGCATTATCTCCATACAGGTGCATCTCAAAGTATCATACATCGTGACGTGAAGACAACGAATATCCTCTTGGATGAGAATTATGTAGCCAAGGTTGCTGATTTTGGTTTGTCTAAAACAATCCATGACAAAGCTCAAATAAGCACCGCGGTTAAGGGTAGTTTTGGATATCTTGATCCCCAGTATTTCAAAAGCCAACAACTGACTCAAAAATCAGATGTATATTCATTTGGCGTAGTACTCTTTGAGGTATTGTGCGCTAGACCAGTTATTTGTTCAACATTGCCAATGGAACAAGCTAATTTGGCTGATTGGGTAATGAAACAACATAAATTCGGTATGCTTCATAAGGCGATTGATCCGCGCATTGCTAATAATATAAATCCCGAATCATACAAGGTTTTTGTACAACTTGGTGTGAAATGTTTATCGGAACTTAGCGTCGATAGGCCTAGTATGGGTGATGTATTGTGGAATTTGGAACATGCTTATCAACTACAGATAGCTTCACCACATGATGGTAATTCACTCTCAAATGCTTTTCAAAATGAAAATGAAAGTGACATAAACAATGATAACTCACATGGTGTCGCAAGTGTTGTGCCTGATAGAATAGGTTCTGATTCTCTTGTGTTTTCTCAGATGGACAATTTTCAAGGAAGGTGA 2595 0.3753 MKHSYNFFSLFILLLLHLFFIPSTCVYNSINDSDFGSSFTPSVNYLIDCGSSLKTQLRDGRIFKSDPDTTSFLSTTEDIQISVDSINLANLSYSPALPLYETARVFTEDTTYSFYIPKPGRLWIRLYFFPLPNPSYNLSSFVFSVHTDHFVLLHEFSQSNNDSLVFKEYLLNVSDHRFSLKFKPRKSSSAFINAIEIVSAPDILLSDSAIQVSPPLGKFNGLMNSALQVSYRINVGGPTITPGNDTLSRTWESDDPYNIFPQGSKSVSVSNKRIIYPQTSDFIVTPLIAPSPIYATCVEMEDPQVMQPNFNLSWMVNVEKKYSYLIRMHFCDIVSRRLDQLYFNVYINGIESVSALDLSYETKALATAYYMDFMIGSSNITNGSILIQVGPTNHKQDISNAILNGIEVMKMSNSADSLDGFFSVDGEYKGPNLRTKLMKLVAIIGFSLAVISLLLLGVMYVRWLRRPLCREESRNFFSWLLPLHSKCNISCSIYSNKYDSPKSKHAGGHSIHHSPRRGSKRFFHFIELQRATGNFDEKKVLGVGGFGKVYLGTLDDGRRVAIKRGSGSSGQGMNEFITELNMLSKLRHRHLVSLVGFCDENSEMVLVYDYVSNGPFRSHLYGSNFSPLSWEKRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENYVAKVADFGLSKTIHDKAQISTAVKGSFGYLDPQYFKSQQLTQKSDVYSFGVVLFEVLCARPVICSTLPMEQANLADWVMKQHKFGMLHKAIDPRIANNINPESYKVFVQLGVKCLSELSVDRPSMGDVLWNLEHAYQLQIASPHDGNSLSNAFQNENESDINNDNSHGVASVVPDRIGSDSLVFSQMDNFQGR 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03394 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Vifa4g03394 864 FunFam Receptor-like protein kinase FERONIA 226 413 - -
Vifa4g03394 864 ProSiteProfiles Protein kinase domain profile. 535 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03394 864 FunFam receptor-like protein kinase FERONIA 498 610 - -
Vifa4g03394 864 Gene3D - 40 201 - -
Vifa4g03394 864 Gene3D - 226 413 - -
Vifa4g03394 864 Gene3D Transferase(Phosphotransferase) domain 1 611 826 - -
Vifa4g03394 864 FunFam Putative receptor-like protein kinase 44 201 - -
Vifa4g03394 864 Pfam Protein tyrosine and serine/threonine kinase 538 746 IPR001245 GO:0004672|GO:0006468
Vifa4g03394 864 Pfam Malectin-like domain 47 411 IPR024788 -
Vifa4g03394 864 Gene3D Phosphorylase Kinase; domain 1 499 610 - -
Vifa4g03394 864 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524
Vifa4g03394 864 SMART serkin_6 535 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03394 864 SUPERFAMILY Protein kinase-like (PK-like) 519 801 IPR011009 -
Vifa4g03394 864 PANTHER OS07G0166700 PROTEIN 521 810 IPR045272 GO:0004714|GO:0006468
Vifa4g03394 864 FunFam Receptor-like protein kinase FERONIA 611 825 - -
Vifa4g03394 864 CDD STKc_IRAK 541 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03394 Vifa-Chr4 1058278091 1058280779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03394 37 813 Receptor kinase-like Gene Family AT5G61350 59.395 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa4g03394 Malectin_like 3.9e-34 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03394 - - gmx:100814982 1080.09