Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03388 ATGACTGACGGTAAAACCACTGGGGAGGAAAATTTGCGGCCAGAAATAACATTTCCTCCTGAAATAACGGTTGGAATTGACATTGAGACTTGCTCATATTGTGTTGCTGTGTGGAACGGTACAGAAGTAGAGTATGCAGTAAATAAGAACAACATGAAGGCATATGACCAAGAGACGTTGATTAAGGCTAAAGTTTTCAAGATGAGGCGCTTGATTGGCCGAGCCGAAACTGACCCCGTAACTCAAGTAACTAGAAATTTGCCTTTTCAGATGTTGGCCATTGACGATGAATCTCCCTCTAGCAGTCCAGAAGAATTTCTGACATCTTATTTGAAGGACTTAAAACAACTTGCTGAGAGTGTACTGGAACGATCGGTAAGAGATTTAGTTCTCACCCATCCAGTTTCATTCAATAGATTTCAGCTAACTCGGATACATGATACATGCCGGAAAGCCGGTCTGCAAATCCTACAGATGATACCTCAACCAACAGCCGTGGCTTTCTTGTATGCACAGCAACAGCTGAAAGCTACTTCTTCTTCTTCTGATCTTAAAGGTAAGAAAACTGCACTCATTTTTAATATGGATTCAGGTTATTGTGATGTTGCTGTGATTGCTGCTACATTAGAAGGAAAATGCCGGATGAAAGCCTTGGCAGGTAGTGCTATAGGTGGAGAGGACGTGATTGGAAATACGATGCGTCTTGTTATACCAGATTTTAAAAACAAATTAAAAAAGAAAGGAAGAAATAAGAAACTCAAATCACTTAGAGTAGAAATACTGAAAGTAATTCATGGACTCAAGGACAAGAGAAGTGTTGAGTTTGATTTAGACTTGGGAGATGGTCGGAAGATACGAAAGGTTGTAAAGAAGGGAGAGTTTGAGGAGGTAAACAGAGAAGTTATTTTAACTTGTGAAAGGCTAATAAGGCGATGCTTGCAAGATTCAAAGATAAAAGCTAACAGTTTAGATGATGTAATAATTGTTGGTGAGTTTGGGAATATGCTAAAGCTGCATAACCTTGTTCCTAAAAAGGGTGTTGCTATGAATCCTTTGGAAGCTGCACTTTGCGGTGCAGCAGTGGCAGGAGCTGTTGCCTCAGGGATTAATGATCCCTCAAATTTAAAGTTGTCTATTTCTCCCATCACATCTCATTCCCTCGGAATTCGAGCTAATGGGAACAAATTTGTGTGTGTCATTCCTAGGAACACTTCACTACCAGTAATGGAGGTTATGAAATTCACAACCAGTCATGAAAATCAAACTGAGGTGTTGATTCTAGTCTATGAAGGAGTTCTTATAATTGAGGTGGTCATGGAAATTGATAGTCTAAACAAGTTGAGAATCGGTGCTGGAGTTTTCGGGCCTGTCGAGATGCCAAAGCCAATGATCGATCCCACAAAATTTTTGGATTATGAGGCACTAAATAGGATGTTTGGTGACAAAATGGATTTGGCAACTTTCGTCAAGAAGAAATAA 1479 0.3996 MTDGKTTGEENLRPEITFPPEITVGIDIETCSYCVAVWNGTEVEYAVNKNNMKAYDQETLIKAKVFKMRRLIGRAETDPVTQVTRNLPFQMLAIDDESPSSSPEEFLTSYLKDLKQLAESVLERSVRDLVLTHPVSFNRFQLTRIHDTCRKAGLQILQMIPQPTAVAFLYAQQQLKATSSSSDLKGKKTALIFNMDSGYCDVAVIAATLEGKCRMKALAGSAIGGEDVIGNTMRLVIPDFKNKLKKKGRNKKLKSLRVEILKVIHGLKDKRSVEFDLDLGDGRKIRKVVKKGEFEEVNREVILTCERLIRRCLQDSKIKANSLDDVIIVGEFGNMLKLHNLVPKKGVAMNPLEAALCGAAVAGAVASGINDPSNLKLSISPITSHSLGIRANGNKFVCVIPRNTSLPVMEVMKFTTSHENQTEVLILVYEGVLIIEVVMEIDSLNKLRIGAGVFGPVEMPKPMIDPTKFLDYEALNRMFGDKMDLATFVKKK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03388 492 Gene3D - 24 363 - -
Vifa4g03388 492 PRINTS 70kDa heat shock protein signature 376 395 - -
Vifa4g03388 492 PRINTS 70kDa heat shock protein signature 22 35 - -
Vifa4g03388 492 PRINTS 70kDa heat shock protein signature 129 149 - -
Vifa4g03388 492 PRINTS 70kDa heat shock protein signature 432 448 - -
Vifa4g03388 492 PRINTS 70kDa heat shock protein signature 349 369 - -
Vifa4g03388 492 Pfam Hsp70 protein 61 431 IPR013126 GO:0005524|GO:0140662
Vifa4g03388 492 Gene3D - 171 350 - -
Vifa4g03388 492 FunFam heat shock 70 kDa protein-like 19 180 - -
Vifa4g03388 492 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 381 448 IPR029047 -
Vifa4g03388 492 PANTHER HEAT SHOCK PROTEIN 70KDA 24 432 IPR013126 GO:0005524|GO:0140662
Vifa4g03388 492 SUPERFAMILY Actin-like ATPase domain 187 365 IPR043129 -
Vifa4g03388 492 CDD HSP70_NBD 24 342 - -
Vifa4g03388 492 SUPERFAMILY Actin-like ATPase domain 22 171 IPR043129 -
Vifa4g03388 492 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 369 450 IPR029047 -
Vifa4g03388 492 Gene3D Actin; Chain A, domain 4 225 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03388 Vifa-Chr4 1056988702 1056990254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03388 24 431 Calmodulin-binding Proteins AT3G12580 30.735 4.76e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03388 K09489 - zju:107423197 372.474