Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03378 ATGGAGACTGAGGAACGTGAGCTTATTGATTTGAACAGCAACCAGAGTAATTGTGGTGGGAATGATAGCAAGAGCGGTGATGGATTCATTGACAGGAGTAAAGTTAGAATTTTGCTTTGTGATAACGATTCCAAGAGTTCAGAAGAGGTTTTTACTCTTCTTTTGAATTGCTCTTATCAGGTTACGTCTGTAAAATCAGCAAGGCAAGTGATTGATGCATTGAATGCAGAAGGGCAATACATAGACATCATACTAGCTGAAGTCGACCTTCCAATAAAAAAGGGAATGAAGATGTTGAAGTACATAGCACGGGATAAAGAATTGCGCCGAATCCCTATTATAATGATGTCTGCACAAGATGAGGTACCAATTGTTGTAAAGTGCTTGAGGCTTGGAGCAGCAGATTATCTAGTAAAGCCTTTACGTACTAATGAGCTATTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTATAGAGAACAACATCGTGAATTATGATTTTGATCTGGTAGCATCAGACCCAAGTGATGCCAATACAAATAGTACCACCCTGTTCTCTGATGACACAGATGACAGGTCCAAAAGAAACACTAATCCAGAGCCTGGAATTTCAATCCAACAAGAACACGAGGATAGCATTGCCACCGATGCTGCTGTTATCGAGGAACTTCCATATGCTAGTCTATCAGAATATCAGCCCGATGTACCAGGAATTAGTGATCAAAGAACAGGTTCTTCAGGACAGCATCCGCCATGCAACAAAGTTACGAATGGTGGCTTTGATGGTCCAAAGAAGAGTGAACTAAGAATTGGAGAGTCATCAGCCTTTTTCACTTATGTCAAAGCAGCAGCAACAACAAAGAGCAACTTCGAAGAGATTGTGCGTGTTGAAGATGATAGTACTTCACAAGGGGTGGAAGATATGAATCAAGTGTATTCTCAACAAGGGGGTAATGACCTTCAAAGACATGAAATTGGAGAAATGATTGAAAGTTGTTCACAAGATGACTTACCCAGAAGCAATAGTATACCTGATTCTTTCTCTATCGAGAGATCGTGTACCCCACCTGTATCAATGGAGGTTTCACAACAAAATAATCATTACGAGAAAGAACATCATCCACAGGGTGTGGTTCATCCAAGAAGTGGAAGTTATGGTTCTGAACTCAACCCACCGAGCATGCCTTCTCAACATGCTTATCCGTATTATATACCAGGAGTTGTTAATCATGTTATGATGCCGTCATCAGCACAACTGTATCAAAATAATATCCAGGGTCTTCAGAATCATACTAGTTCATCTATGATTGCCCAGTACAGTCATCTTCCCCAATGTCCACCTCATGCAACTGGGATGACACCCTACCCGTATTTTCCAATGAGTATTTGTTTACAAACTGGTCAGGTTTCTGCAACTCATTCATGGCCGTCATTAGGAAGTTCAACTCCATGTGAAGCAAAGTTGAGCAAAGTTGATAGGAGAGAAGCAGCATTAATGAAGTTTAGACAGAAAAGAAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAATCGAAAACAACTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAGTTTGTCAGAAAGTTGAATGGTATTAATGTGGATCTAAATGGACAACCTGCTTCCACCGACTATGATAATGATGATGATGAGGAGGAAGAAAACAATGGCGTGAGAGATTCATCTCCTAAGAATGCTTGA 1740 0.4086 METEERELIDLNSNQSNCGGNDSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLNCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPIKKGMKMLKYIARDKELRRIPIIMMSAQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLIENNIVNYDFDLVASDPSDANTNSTTLFSDDTDDRSKRNTNPEPGISIQQEHEDSIATDAAVIEELPYASLSEYQPDVPGISDQRTGSSGQHPPCNKVTNGGFDGPKKSELRIGESSAFFTYVKAAATTKSNFEEIVRVEDDSTSQGVEDMNQVYSQQGGNDLQRHEIGEMIESCSQDDLPRSNSIPDSFSIERSCTPPVSMEVSQQNNHYEKEHHPQGVVHPRSGSYGSELNPPSMPSQHAYPYYIPGVVNHVMMPSSAQLYQNNIQGLQNHTSSSMIAQYSHLPQCPPHATGMTPYPYFPMSICLQTGQVSATHSWPSLGSSTPCEAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDNDDDEEEENNGVRDSSPKNA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03378 579 ProSiteProfiles CCT domain profile. 499 541 IPR010402 GO:0005515
Vifa4g03378 579 MobiDBLite consensus disorder prediction 240 265 - -
Vifa4g03378 579 MobiDBLite consensus disorder prediction 546 579 - -
Vifa4g03378 579 MobiDBLite consensus disorder prediction 240 258 - -
Vifa4g03378 579 Pfam CCT motif 499 541 IPR010402 GO:0005515
Vifa4g03378 579 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Vifa4g03378 579 SMART REC_2 35 150 IPR001789 GO:0000160
Vifa4g03378 579 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Vifa4g03378 579 MobiDBLite consensus disorder prediction 183 215 - -
Vifa4g03378 579 Gene3D - 35 225 - -
Vifa4g03378 579 SUPERFAMILY CheY-like 31 160 IPR011006 -
Vifa4g03378 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 294 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03378 Vifa-Chr4 1055160364 1055165009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03378 24 578 Response Regulator Gene Family AT5G61380 48.896 4.65e-177 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vifa4g03378 Response_reg 7.9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03378 K12127 - gmx:100786522 885.56