Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03370 ATGGAAACTGGACGAAACGAAACACCCCTTTTGCTTTTTCGTTTTGTCTCTAAATTTTTATTATGCGCCATTTCTGGAACTCTCACAGCATGTTTTGCCGTTGCGGGGGCTTTAACAGGAGCTGTTGCTGGTGCTTTAGCAGCTAAGGCTACAAAGAGTGGTTTTCTTCGGGGAGTTTCATTGGGGGCCATTGCTGGGGCTATACTCTCGGTTGAGGTATTGGAAGCTTCCCGTGCGTACTGGTGTATGGAGCAAACTGGTTCACGAGGAACGTCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGAAGGCTTGTAGAAGAATCGCTTACACCAGCTATTTTAACTGCTTACAATTTGCAATTTGAGCAGGTTGGAATTGCTAATAACACTGGTTATGATGAGATTCATGATCTTCAGAGCTTAGTAGCATCCAGAGGATTGTCAGGTGATTCATTGAGTAAGCTACCGCACCATATGATCATGAAGGACATGAAGGCAGAGGATACTTTGTGTGCAATATGTTTACAGGATATGGAAGTAGGTGAAGTTGCAAGAAGCTTACCTCATTGTTACCATACATTTCACTTGATATGTGTGGATAAATGGCTTGTGAAGAATGATTCATGTCCTATTTGCAGACAGAATGTGTAG 657 0.4277 METGRNETPLLLFRFVSKFLLCAISGTLTACFAVAGALTGAVAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGTSSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANNTGYDEIHDLQSLVASRGLSGDSLSKLPHHMIMKDMKAEDTLCAICLQDMEVGEVARSLPHCYHTFHLICVDKWLVKNDSCPICRQNV 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03370 218 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Vifa4g03370 218 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Vifa4g03370 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 218 IPR013083 -
Vifa4g03370 218 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 217 IPR044523 -
Vifa4g03370 218 Pfam Ring finger domain 173 215 IPR001841 -
Vifa4g03370 218 SUPERFAMILY RING/U-box 154 218 - -
Vifa4g03370 218 SMART ring_2 173 214 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03370 Vifa-Chr4 1053946519 1053948582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03370 16 218 C3H Transcription Factor Family AT1G74410 54.902 1.16e-70 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03370 - - gmx:100800105 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03370 4 1053946519 1053948582 Vifa4g03370 4 1053946519 1053948582 ECH