Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03365 ATGGAAAACATTTCAGTGTTACCATCTAAGGAAGATGAAAAGATGGATTTGCCTCCTGGATTTCGGTTTCATCCAACTGATGAAGAGCTTATAAGTCATTACCTTTACAAAAAGGTTATTGATTCGAATTTCTCCGCGAAAGCTATCGGAGATGTAGACCTCAACAAGTCTGAACCTTGGGATTTACCATGGAAAGCTAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGTTTGAGGACAAACAGAGCAACAGAAGCAGGCTATTGGAAAGCAACAGGGAAAGATAAAGAGATTTTCAAAGGGAAATCGTTGGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCAAAAGGCGAAAAAAGTAATTGGGTCATGCATGAATATCGTCTCGAGGGTAAATTCTCTGTTCACAATCTTCCTAAAGCTGCAAAGAATGAATGGGTTATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGTAAAAAAACACATATTTCTGGGATAATGAGGTTGGATACACTTGGTAATGAATTTGGTTCAGTTTTACCACCACTTACCGATTCGATTGGGAAAATCAAACAATTGAATGATTCGGCTTACGTGCCCTGCTTCTCCAATTCAATTGATGTTCAAAGAAACCAAGGAGGGATCTTTGATTCATTCACAAACTCGATTTACGGCGTTTCTTCAAATAATCCACACGATGTTTTTCAAAGAGGTTCATTATACTCTTCTTCTAATCAATCTAATTTTCAATTTCCTAGTTCTGTTTGCGGTATTCAAGATCATTCACTTTTAAGAGCTCTATACGAAAACAACAGTTTCAAAACCGAGCGACAACAACAACAACAAATTGTGAGTGTTTCACAGGAAACAGATCTAACTACTGATATCAACGCTGAAACGTGTTCTGTTGTGTCAAATTTTGGTATCGGTAGAAGGGCTTTCGAGAATAATAATCATCAACATCGTCCACCACCTGTTGATTTTGATGGTGCTTTATGGAATTACTAA 1047 0.3763 MENISVLPSKEDEKMDLPPGFRFHPTDEELISHYLYKKVIDSNFSAKAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKNEWVICRVFQKSSAGKKTHISGIMRLDTLGNEFGSVLPPLTDSIGKIKQLNDSAYVPCFSNSIDVQRNQGGIFDSFTNSIYGVSSNNPHDVFQRGSLYSSSNQSNFQFPSSVCGIQDHSLLRALYENNSFKTERQQQQQIVSVSQETDLTTDINAETCSVVSNFGIGRRAFENNNHQHRPPPVDFDGALWNY 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03365 348 FunFam NAC domain-containing protein 100-like 26 171 - -
Vifa4g03365 348 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Vifa4g03365 348 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Vifa4g03365 348 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Vifa4g03365 348 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Vifa4g03365 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03365 Vifa-Chr4 1053308089 1053309341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03365 15 348 NAC Transcription Factor Family AT5G07680 58.997 1.22e-129 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa4g03365 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03365 - - cam:101502392 595.504