Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03351 ATGGGGAGAGTTAAACTTAAGATTAAAAAATTGGAGAGCACAAGCAACAGACATGTGACTTATTCAAAGAGGAAAAGTGGAATCTTAAAGAAAGCAAAGGAATTATCAATTCTATGTGATATTGATATTCTCCTTCTCATGTTTTCTCCAACAGGAAAACCTACCTTGTTACAAGGAGAGCGCAGTAATATGGAGGAGATCGTTGCAAAATTTGCCCAACTTAGTCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCACTGAAGAAAACCTTCAAGAAATTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCGAGCAGTCAAACGGTGGAGGATCTAAGTCATCAAGTGAGAGTTTCACAAGCGCAACTTGGAGAAATACAACAGAGACTGAGCTATTGGAGTAATCTTGAGAAGATCAATAACTTGGAACATCTTAGACAAATGGAAGACTCGCTCAGGGAATCAATCAATCGGGTGTGTATACAAAAGGAAAATTTAGGAAAACGCCAACTAATGTCACTTGAATGTGCCAACCAGTTACCGGAAGGGATGACTTTACCCATGATGATGGCTGGTCTACAAGAATCCCAACCCTTGTCTTGGCTTCTAAGTGGTGATAATCACCAATTGTTGTTACCTAGTGAACCAAAATTTCTGCCATTTAGTGATACTGGCAATAGAGACGCGGAGTGCTCCACCGACATTTCACTCCCAGGGTACTCAGGTTATATTGGAAACGGTAAACTTGAGGTTGGAAGCTCTCCAAATGTCACTACTTTGGGTCAGGGAAACGGTAACTTGAACGAGTTAAATGGAAATCCAAATCCTTACTTAAATGTACAACATTGTGAGCAGCAGTTTGCATACCCTCCTTCGCAAGATCTCGAGGACGCGAAACATCACCAAACATTGAATAGTAAATCAAATGCTACAGATTATCAAGTTAATAACAATTATGAACTTCCGAGGTCACTATTTGAAACGGGACATCAGTTCTGGAATTCTACTCCCGGCTCTTGTGGGATTGCCATGTATAATGAGAATGGCTACCATAGGGTAAGCAAATAG 1083 0.4026 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNMEEIVAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEDLSHQVRVSQAQLGEIQQRLSYWSNLEKINNLEHLRQMEDSLRESINRVCIQKENLGKRQLMSLECANQLPEGMTLPMMMAGLQESQPLSWLLSGDNHQLLLPSEPKFLPFSDTGNRDAECSTDISLPGYSGYIGNGKLEVGSSPNVTTLGQGNGNLNELNGNPNPYLNVQHCEQQFAYPPSQDLEDAKHHQTLNSKSNATDYQVNNNYELPRSLFETGHQFWNSTPGSCGIAMYNENGYHRVSK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03351 360 Coils Coil 77 97 - -
Vifa4g03351 360 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa4g03351 360 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa4g03351 360 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa4g03351 360 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa4g03351 360 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Vifa4g03351 360 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Vifa4g03351 360 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Vifa4g03351 360 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Vifa4g03351 360 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa4g03351 360 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vifa4g03351 360 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03351 Vifa-Chr4 1049826756 1049829415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03351 1 276 Type I MADS-box Gene Family AT2G03060 51.228 2.64e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa4g03351 SRF-TF 8.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03351 - - pvu:PHAVU_003G189100g 570.852