Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03344 ATGGAGGGAGGAGATGATCTCCACCACCATCATCACCACCATCAACACCAACACCACCATCACCAACAACAACAGCGTCAGAATCAAAACTTCCCATTCCAGCTTCTTGAGAAAAAAGAAGACCAACAAGAAGCAGCTTCATGTTCAACCTCTTCACCATATCCATCACTAGCAATCTCACCTACAGAACCAAGCACGTCAAATTCAAACCGATCCAACCAACTAGTACCAGCAGCAGCACCAACAACCTCCGACCCGGGAAGCAAAAAACCACCTCCCAAGAGAACCTCCACCAAAGACCGTCACACCAAAGTAGAAGGCCGCGGCCGCCGCATCCGAATGCCTGCACTCTGCGCTGCTAGAGTTTTCCAACTAACACGCGAACTCGGCCATAAATCCGACGGAGAAACCATCGAATGGCTCCTCCAACAAGCCGAACCAGCCGTCATAGCCGCTACTGGTACCGGAACTATCCCTGCTAACTTCACCTCTCTCAACATCTCGCTCCGTAGCTCAGGCTCTTCCATGTCTGTTCCATCTCAGCTAAGATCTTCTTACTTCAACCCGAACTTCTCACTTCAGCAACGAAGAACTCTTTTCCCTGGAATCGGTTTATCTTCTTCAGACAACAACAACAACAACACATCAATGCTTTTGAATTTCCAATCCAATAACCTAACAAGCATGTTGCAGGCGAAACAAGAGCTTCGAGATGGAAACGCAAACGCAAACACAAACTCGAACGCGCCTTCTTCATCAACAACGTTGGATTTATCAGAAACAAGCGGAGAAGATCAATCTATGGGAGGAAGAAAAAGAAGACCTAGCAGTGAGCAAGATTTATCATCCATACAACATCAAATGGGGAGTTACCTGCTGCAGTCAAGTGCAGGTTCGATTCCGGCGAGCCATACTCAGATGCCGGCGAATATATGGATGGTTGCAAATTCCAATAACCAAATAATGAGTGGTGGTGATCCTATATGGACTTTTCCGTCGGTGAATAATAGTGCTGCTGCTTTATATAGAGGAGCAGTTTCAACAAGTGGTTTACATTTTATGAATTTTCCACAGCCCATGGCTTTGTTACCGGGTCAGCAATTAGGTAGTTCATCCATTGGCAGCGGCAGTGGCGGTGGTAGTGGTGGAAGTAGTGGCGGAGGAGGTGGTGGAAATGTCAATATGAATATGAACATGAATGAAGGACATTTGAGTATGCTCGCCGGTCTAAGTCCTTATCGTCCGGTTTCTGATCATCAATCTCATCATCAACAACAACAACCAAGTGGATCACAATCACATCATCGCGGTGGTAGCCACGACGATAGACATGATAATTAA 1341 0.4653 MEGGDDLHHHHHHHQHQHHHHQQQQRQNQNFPFQLLEKKEDQQEAASCSTSSPYPSLAISPTEPSTSNSNRSNQLVPAAAPTTSDPGSKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIGLSSSDNNNNNTSMLLNFQSNNLTSMLQAKQELRDGNANANTNSNAPSSSTTLDLSETSGEDQSMGGRKRRPSSEQDLSSIQHQMGSYLLQSSAGSIPASHTQMPANIWMVANSNNQIMSGGDPIWTFPSVNNSAAALYRGAVSTSGLHFMNFPQPMALLPGQQLGSSSIGSGSGGGSGGSSGGGGGGNVNMNMNMNEGHLSMLAGLSPYRPVSDHQSHHQQQQPSGSQSHHRGGSHDDRHDN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03344 446 ProSiteProfiles TCP domain profile. 98 152 IPR017887 -
Vifa4g03344 446 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 429 IPR005333 GO:0003700
Vifa4g03344 446 MobiDBLite consensus disorder prediction 365 401 - -
Vifa4g03344 446 MobiDBLite consensus disorder prediction 1 111 - -
Vifa4g03344 446 Pfam TCP family transcription factor 96 251 IPR017887 -
Vifa4g03344 446 MobiDBLite consensus disorder prediction 45 81 - -
Vifa4g03344 446 MobiDBLite consensus disorder prediction 240 265 - -
Vifa4g03344 446 MobiDBLite consensus disorder prediction 365 446 - -
Vifa4g03344 446 MobiDBLite consensus disorder prediction 240 284 - -
Vifa4g03344 446 MobiDBLite consensus disorder prediction 417 434 - -
Vifa4g03344 446 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03344 Vifa-Chr4 1046732820 1046734160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03344 88 389 TCP Transcription Factor Family AT3G47620 47.297 8.05e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa4g03344 TCP 3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03344 - - psat:127073804 664.84