Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03343 ATGGTTGAGACATCGAAAAACAGGTCTTCTCCTTGTAGAATGAAAGTCCCCAAGAGAATTCACAAGGCCGAAAGAGAGAAAATGAAACGTGAACACTTGAATGAACTCTTTCTTGATCTTGCCAATGCTCTTGATCTCAATGATCCAAACAGTGGAAAGGCTTCTATATTGTGTGAAGCTTCTAAGCTGCTAAAGGATTTGCTCTGTCAGATTCAGTCCCTCAAGAAGGAGAACGTCTCTTTGTTGTCTGAATCTCAATATGTGACCGTTGAGAAAAATGAGCTGAAGGAAGAGAATAGTAGCCTAGAAACTCAAATCGAGAAACTTCAAGGAGAGATAAAGGAAAGGATGGCTCATTCTAAACCTGACCTGAATGCACCTCCTCAATTGGAGCTTGAGCTGCCAGAGCAAACAAAATTTGCAGGATATGGTCTCCAAATGCCTACCATAGAACCTTCATTGCAGCAAGGACCTACTGTTTTGGTTGTCCCTTTTCGTCCTGATCTTCAAGCTGCCTTTCCAGCTCCTAATGTTGCTGATCTCATGCCAAACCCTACATCTGTTATCACTAAACCACATGCCAGGTATCCCACGCCAGCAGATTCATGGCCATTGCAACTGCTTGGAGAGCAACCAACTTCTAGTTAA 648 0.4306 MVETSKNRSSPCRMKVPKRIHKAEREKMKREHLNELFLDLANALDLNDPNSGKASILCEASKLLKDLLCQIQSLKKENVSLLSESQYVTVEKNELKEENSSLETQIEKLQGEIKERMAHSKPDLNAPPQLELELPEQTKFAGYGLQMPTIEPSLQQGPTVLVVPFRPDLQAAFPAPNVADLMPNPTSVITKPHARYPTPADSWPLQLLGEQPTSS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03343 215 MobiDBLite consensus disorder prediction 190 215 - -
Vifa4g03343 215 Coils Coil 92 119 - -
Vifa4g03343 215 Gene3D - 14 93 IPR036638 GO:0046983
Vifa4g03343 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 67 IPR011598 GO:0046983
Vifa4g03343 215 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g03343 215 PANTHER TRANSCRIPTION FACTOR BHLH47 8 214 - -
Vifa4g03343 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 83 IPR036638 GO:0046983
Vifa4g03343 215 Coils Coil 64 84 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03343 12 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 50.450 2.51e-59 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03343 - - psat:127073805 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03343 4 1045265139 1045266520 Vifa4g03343 4 1045265139 1045266520 ECH