Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03336 ATGGGAAATTGCTTTGGAAGTCGTTCCAAGGTTGATGTCCCTCTCACCTCCCAACCCAATTCAGCTCATCTTAAAAGCACTCAATTGTTAGTTCAATCAGCAAATGGAAACAGTGAAGGTGGTAAACCTGAGATTCTACCAACTCCGAGATCGGAAGGGGACATACTTTCTTCTCCTCATTTAAAAGCCTTTACATTTAAGGATCTTAGGAATGCCACTAAAAACTTCAGTAATGATAGTTTGATCGGACAAGGAGGATTCGGTTACGTTTATAAAGGCTGGATTGATGGTCGATCGCTTAAAGCCGCAAAGCCTGCTGCTGGAACTGCTGTTGCTGTCAAGAAACTTAAGCCTGAAGGTTTTCAAGGCCATAAAGAGTGGCTGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTACTGGATATTGCCTAGATGGGGATAACAGGCTTCTAGTCTATGAGTTCATGCCTAATGGAAGCTTAGAAAATCATCTATTTCGCAAGGGCACACAACTACTTCCTTGGGCAACAAGGATCAAAGTTGCGACTGGTGCTGCTCGAGGTCTCACTTTTCTACATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGACTCGGAATTTAATGCGAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCTACTGGCGATCGTTCTCATGTTTCTACTCAAGTCCTGGGAACTCAAGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGCTGACAACAAGGTGCGATGTCTATAGCTTTGGAGTTGTGCTACTAGAACTACTATCAGGCCGAAATGCGGTCGATAAAACAAAATCAGGAGTGGAACATAATCTGGTAGATTGGGCGAGACCGTATTTGGGCGATAGAAGGAAATTGTTTCGGATTATGGACACGAGATTAGAAGGGCAGTATCCACAAAGGGCAGCTTATACAGCTGCAATTCTTGCATTACAGTGTATTAGTGAGGCCAAGTTTAGACCACAAATGTCTGAGGTTTTGGCTACTTTGGAACAATTGCCGGTCATCAGAAATTCGCCTTCTCCTTCTAGATTAGAGGTGAAACCAATCTCAAGTCCAATACGAGAGATAATCTAA 1152 0.4262 MGNCFGSRSKVDVPLTSQPNSAHLKSTQLLVQSANGNSEGGKPEILPTPRSEGDILSSPHLKAFTFKDLRNATKNFSNDSLIGQGGFGYVYKGWIDGRSLKAAKPAAGTAVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLTGYCLDGDNRLLVYEFMPNGSLENHLFRKGTQLLPWATRIKVATGAARGLTFLHDSNQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVLGTQGYAAPEYIATGRLTTRCDVYSFGVVLLELLSGRNAVDKTKSGVEHNLVDWARPYLGDRRKLFRIMDTRLEGQYPQRAAYTAAILALQCISEAKFRPQMSEVLATLEQLPVIRNSPSPSRLEVKPISSPIREII 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03336 383 CDD STKc_IRAK 82 358 - -
Vifa4g03336 383 Pfam Protein tyrosine and serine/threonine kinase 80 297 IPR001245 GO:0004672|GO:0006468
Vifa4g03336 383 Gene3D Phosphorylase Kinase; domain 1 57 161 - -
Vifa4g03336 383 FunFam Serine/threonine-protein kinase BIK1 46 161 - -
Vifa4g03336 383 Gene3D Transferase(Phosphotransferase) domain 1 162 366 - -
Vifa4g03336 383 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03336 383 ProSitePatterns Protein kinases ATP-binding region signature. 82 115 IPR017441 GO:0005524
Vifa4g03336 383 PANTHER OS01G0588500 PROTEIN-RELATED 37 358 - -
Vifa4g03336 383 FunFam Serine/threonine-protein kinase PBS1 162 372 - -
Vifa4g03336 383 SUPERFAMILY Protein kinase-like (PK-like) 54 356 IPR011009 -
Vifa4g03336 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03336 Vifa-Chr4 1043687810 1043690184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03336 62 355 Glycoside Hydrolase AT3G07070 52.685 4.14e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa4g03336 PK_Tyr_Ser-Thr 7.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03336 - - gmx:100791844 583.178