Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03332 ATGGTAAATCATTCCAGCTTCTGGACTCAAGCAAACGCGCTTCTCAGGAAGAACTTAACCTTCCAGAAACGGAACGTGAAAACCAACCTTCGGCTGATTCTATTCCCAGTGATCCTTTGCATCTTGCTCGTTCTTATTCAAACCTTAATCGACTCTCAATTGGATACACTTGAATCCAAATGCGCTTGCGCCTGTCCCGATAAAAGCACAACATGTAACAATTCGGAGAAGGTTTGTGGAGTTCAGAATTCCAAGCAGAATCAACCTATAGACTGTGTAATTCCTAAGCCACCGGAATGGCCTCCCGTTTTGCAACTTCCTTCTGCCTTTTGCAAGGCTAATGGCACCTGTCCGGTTAAAGTGCTTTTCACCGCCAATAATCAATCCTTTGGACAGATTTTGTCTGACAATATGTTCCCAAGTGCTCCCATTGTGAATGACTCTGATATCATGGCTAGTTTGGCATGGAATGTGGTGGGATCTGAAGCAAATCCTGAGGAGACCTATTTTAATGAACCTGCTTTTACTTCGGATCGTCCCCTTTTTTATGTACAAAATGAGTGCCCTGAGGACAACTCTGGACTCACATTTCCCTACCAGATAGCAGGCACAACTTCGGATAAAGAAATCAAATGTGCTCAATGTACAAGTTTTTGGCGGAAAAGCTCTTCTGATATCAACAATGAGTTATATAATCTTTATAAAAGAGATAACAAAAGTGAAATCGATGACGTAGCTTCAGCTTTTGATTTTCTTGATTCAAATGAGGAGGGGTTCAATATCACTGTCTGGTACAAGACAAACTTCATGCCTAACACTGATTCTCCTACACTGTTGCGAATTCCTCGTTCTGTAAATCTTATATCAAATGCCTACCTGCAGTTTCTGCGTGGACCCGAGACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAATTTTCAACCACAGTTAGCATTGAGATAGCTTCTCTCCTGGGCGGTCTGTTCTTTACATGGGTTGTCCTGCAACTTTTTCCGGTTATTCTGACATCACTGGTTTATGAGAAGCAACAAAAACTAAGAATCATGATGAAAATGCATGGTCTTGGGGATGGACCATATTGGATGATTTCATATGGTTATTTTCTTGCCTTATCAGTGAGCTACATGTTGTGTTTTGTGATATTCGGCTCAGTCTTAGGACTAAAATTCTTCTACTTGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAACTTACAAATTTCTCTGGCATTTCTGCTGTCTTCCTTTTTTTCAAATGTTAGGACTGCTACAGTGACAGCATATATAGCTGTCTTTGGAACGGGGCTATTAGGCGGCTTTCTTTTCCAATCTTTTATAGATTCACCATTTCCAAGAGGATGGATCATTTGTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTGTACGAGTTTGCACAGTCTGCAGCCAATGCTAGTAATTCGGGTGCTTATGGTATGCGGTGGCAGGATCTAAGTGATAGTTCCAATGGCATGAAAGAGGTCTTAATCATCATGTTTGTTGAGTGGAAATTAGTGCTTTTTGTTGCTTATTACATCGATCAAGTATTGTCAACGGGAAGTGGAAAAAGTCCATTTTTCTTCTTGAAAGGATTTCAGAAAAAACCTCCTTTGTCATTCGGTAAGCCTGGTATTCAAAGGCAGGGGTCTAAAGTTTTGACTCAGATAGAGAAACCAGATGTCATCCAAGAGAGGGAGAAGGTGGAGCAGCTACTACTTGAACCAACCGTTAATCATGCAATTGTTTGTTACGACCTTAAAAAATTCTATCCAGGAAGGGATGGAAATCCAGGGAAATTTGCAGTGAGAGAATTGTTCCTTGCTGTGTCTCGAGGGGAATGCTTTGGTATGCTTGGTCCTAATGGTGCAGGGAAAACTTCTTTTATTAGTATGATGATTGGTCTCACAAAGCCAACATCTGGTGCCGCATATGTTCAAGGCCTAGACATAAGAGCTCATATGGATGAAATATATACTAGCATGGGAGTATGCCCACAGCATGACTTGCTATGGGAAAGCTTGACCGGTAGAGAGCACCTACTTTTTTATGGTAGACTAAAAAATCTTAAAGGTTCCGTCTTGACTCAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATAAACAAGCTGGAAAATACAGTGGAGGGATGAAAAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGACCCCAAAGTTGTTTATATGGATGAACCAAGTACTGGATTGGACCCTGCTTCAAGGAAATGCCTATGGAGTGTTATCAAGCTTGCGAAAAGAGATCGTGCAATCATTCTCACTACACATTCTATGGAAGAGGCAGAGGCCTTATGTGATCGATTAGGAATTTTTGTAGATGGTAGCTTGCAGTGCATTGGAAATCCAAAAGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTTCCGATCACGAGAAGGATGTGGAGAACATGGTACAACAGCTCACCCCAAATGCCAACAAGATATACTGTCTCTCTGGTACACAGAAATTTGAGCTACCAAAAGAGGATGTTAAAATTGCCAATGTATTCCAAGCAGTTGAAGTTGCAAAAAGAAGGTTTACTGTTTTTGCATGGGGTTTAGCTGACACCACATTAGAAGATGTCTTTATTAAGGTTGCACGCGAGGCTCAGGCATTTGATACCTTGTCATAA 2772 0.4087 MVNHSSFWTQANALLRKNLTFQKRNVKTNLRLILFPVILCILLVLIQTLIDSQLDTLESKCACACPDKSTTCNNSEKVCGVQNSKQNQPIDCVIPKPPEWPPVLQLPSAFCKANGTCPVKVLFTANNQSFGQILSDNMFPSAPIVNDSDIMASLAWNVVGSEANPEETYFNEPAFTSDRPLFYVQNECPEDNSGLTFPYQIAGTTSDKEIKCAQCTSFWRKSSSDINNELYNLYKRDNKSEIDDVASAFDFLDSNEEGFNITVWYKTNFMPNTDSPTLLRIPRSVNLISNAYLQFLRGPETKMLFEFVKEMPKFSTTVSIEIASLLGGLFFTWVVLQLFPVILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLALSVSYMLCFVIFGSVLGLKFFYLNDYSIQFVFYFIYINLQISLAFLLSSFFSNVRTATVTAYIAVFGTGLLGGFLFQSFIDSPFPRGWIICMELYPGFALYRGLYEFAQSAANASNSGAYGMRWQDLSDSSNGMKEVLIIMFVEWKLVLFVAYYIDQVLSTGSGKSPFFFLKGFQKKPPLSFGKPGIQRQGSKVLTQIEKPDVIQEREKVEQLLLEPTVNHAIVCYDLKKFYPGRDGNPGKFAVRELFLAVSRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYVQGLDIRAHMDEIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSVLTQAVEESLKSLNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWSVIKLAKRDRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSSDHEKDVENMVQQLTPNANKIYCLSGTQKFELPKEDVKIANVFQAVEVAKRRFTVFAWGLADTTLEDVFIKVAREAQAFDTLS 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03332 923 CDD ABC_subfamily_A 605 826 - -
Vifa4g03332 923 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 572 917 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vifa4g03332 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 829 IPR027417 -
Vifa4g03332 923 ProSitePatterns ABC transporters family signature. 740 754 IPR017871 GO:0005524|GO:0016887
Vifa4g03332 923 FunFam ABC transporter A family member 7 590 866 - -
Vifa4g03332 923 Pfam ABC-2 family transporter protein 308 489 IPR013525 GO:0016020|GO:0140359
Vifa4g03332 923 Gene3D - 593 865 IPR027417 -
Vifa4g03332 923 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 838 IPR003439 GO:0005524
Vifa4g03332 923 Pfam ABC transporter 626 767 IPR003439 GO:0005524
Vifa4g03332 923 SMART AAA_5 631 814 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03332 Vifa-Chr4 1043469846 1043480788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03332 610 849 Calmodulin-binding Proteins AT2G36910 23.077 8.20e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03332 - - tpra:123887097 1399.42