Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03331 ATGGGTAAATCACCAGGAAAATGGATCAAAACTGTTTTGTTTGGGAAGAAGTCATCCAAATCAAATATACCAAGAGGAAGAGAGCTTGTTAATAAAAAAGAAGGAGTTGTTACTTCCAAGGTTTCAGAAACTGGTTTGGCTTTGGAGCCAACCACCGATACCATTACCATTCCCAGACACGAGGAAGAGCTGGAGCTGGAGAGTAGAGAAGCAGAAAATGTTTTGCCTGATAATCAAGAAATTGACACAGTGGGACCTGTTCATCAAGATGCACCACTTGATCCAGAAATATTGAGGCGGGAGGAAGCAGTTACGAAAGCACAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTCAGAGCCCTTAAAGGCATAATAAGGTTACAAGCACTTATTCGTGGGCACTTGGTTAGAAGACAAGCTGTTGTTACATTATGCTGTATGTATGGAATTGTCAAATTACAAGGACTTGTTCAGGGACAAAGAGTTAGACAGTCTGATGTTGGATTTGAAATTCATGAGAAGTGCAATCTATTAAAGCTTCAGGATGACAAACCTGTCAAGCCAATTGCTATATCTGATAAAATTCTGAAGCTGTCAGCCAATAATTTCATCCGAAAGCTTATTGCTTCCTCTACTACAATAATGGCCCTGCGTTTGCAATATGTCCGCGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCGGTTTTGGAGGCCAATTCCCCAACCCAAGAAAATCCGGGATACTAAGTCTCAGAAAAAGCAGGGTAATATTGCAACTGGAGATGCTCAAACAAGCAAGTCAAAACGTACCCACAGGAAGCTTTCTACTGCAAATTTTGACCTAGCCCCAGCACAAGCAAATCCTGAATTTGAAAAACCAAAACGAAATGTAAGGAAATTTCCAAGCCAACCCTCTGATCCTGTGCTGGAAAATCCCCAAATTGAGCTTGAGAAGATTAAGCGAAACTTGAGAAAGGTTCATAACCCAGTTGTTGAGACTTCAGTTCTGTCAGAAGTTGAATCTGAGACTCAGAAGCCACATCTGGAAAAAGAAACAGTTGCCTCAAGTGTCGGTGTTTCAGAACAAGCAGTCATCAGTTCTAATGAAAGAATCAAGAAGGAAGCAATGAAAATCATTTCCAGTGAGCTGGATATTGGAATTACTGCTGGAGGTTTAGTTAGTAAGGTGTTTGACACTCCAAGCAGTTATCAGGTGAATGTGGAATCAAAGCCCTTGACAGATATTACCAGTAAAGATGAGAACATTTCTGATGATGAAATGAAAAATGAGTCCATAGATTTAGTTGAGACTAGCAAAGATGAAAATTCTCACTTAACCAATGGAGGTTTGAGTCACAAGGAAGATCAAACAGGTAGTGAAAATCAGAAACCAATCCGAAAAGCCTCAATTGTAGCTAAGCAGGAACGTGTCGAGAACGGTGCACATAATAGCCCGACAGTACCTAGTTATATGGCAGCAACTGAATCTGCCAAAGCAAAATTACGGGCTCAAGGATCCCCGAAAATTGGACAAGATGGAAGTGAGAAAAACAACAATCCTCGGCGACATTCTCTGCCATCTTTAACTAACAGCAAAATCAGTTCTCATTCACCTAGGACACAGAGGCCAGTTCATTCAGGTGGTAAAGGGGCCCACAAAAGTGACAAAGCTGTATCTTCTGTGGTTGGAAACGGCAAGGTAGTTCAAGCAGAATGGAAGAGGTAA 1749 0.418 MGKSPGKWIKTVLFGKKSSKSNIPRGRELVNKKEGVVTSKVSETGLALEPTTDTITIPRHEEELELESREAENVLPDNQEIDTVGPVHQDAPLDPEILRREEAVTKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQGLVQGQRVRQSDVGFEIHEKCNLLKLQDDKPVKPIAISDKILKLSANNFIRKLIASSTTIMALRLQYVRGDPNSVLSWLERWSASRFWRPIPQPKKIRDTKSQKKQGNIATGDAQTSKSKRTHRKLSTANFDLAPAQANPEFEKPKRNVRKFPSQPSDPVLENPQIELEKIKRNLRKVHNPVVETSVLSEVESETQKPHLEKETVASSVGVSEQAVISSNERIKKEAMKIISSELDIGITAGGLVSKVFDTPSSYQVNVESKPLTDITSKDENISDDEMKNESIDLVETSKDENSHLTNGGLSHKEDQTGSENQKPIRKASIVAKQERVENGAHNSPTVPSYMAATESAKAKLRAQGSPKIGQDGSEKNNNPRRHSLPSLTNSKISSHSPRTQRPVHSGGKGAHKSDKAVSSVVGNGKVVQAEWKR 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03331 582 MobiDBLite consensus disorder prediction 424 448 - -
Vifa4g03331 582 PANTHER IQ-DOMAIN 5-RELATED 1 541 - -
Vifa4g03331 582 MobiDBLite consensus disorder prediction 518 550 - -
Vifa4g03331 582 SMART iq_5 99 121 IPR000048 GO:0005515
Vifa4g03331 582 SMART iq_5 122 143 IPR000048 GO:0005515
Vifa4g03331 582 MobiDBLite consensus disorder prediction 345 374 - -
Vifa4g03331 582 Gene3D - 98 147 - -
Vifa4g03331 582 ProSiteProfiles IQ motif profile. 124 146 IPR000048 GO:0005515
Vifa4g03331 582 MobiDBLite consensus disorder prediction 249 320 - -
Vifa4g03331 582 Pfam IQ calmodulin-binding motif 124 141 IPR000048 GO:0005515
Vifa4g03331 582 Pfam IQ calmodulin-binding motif 102 121 IPR000048 GO:0005515
Vifa4g03331 582 MobiDBLite consensus disorder prediction 449 463 - -
Vifa4g03331 582 ProSiteProfiles IQ motif profile. 100 128 IPR000048 GO:0005515
Vifa4g03331 582 Pfam Protein of unknown function (DUF4005) 482 562 IPR025064 -
Vifa4g03331 582 MobiDBLite consensus disorder prediction 424 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03331 Vifa-Chr4 1042980122 1042984745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03331 1 582 IQD Protein Family AT1G74690 44.335 5.31e-127 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03331 - - gmx:100794636 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05117 1 797314120 797317001 Vifa4g03331 4 1042980122 1042984745 ECH
Vifa4g03331 4 1042980122 1042984745 Vifa4g03331 4 1042980122 1042984745 ECH