Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03330 ATGGGTAAATCACCAGGAAAATGGATCAAAACTGTTTTGTTTGGGAAGAAGTCATCCAAATCAAATATACCAAGAGGAAGAGAGAAGCTTGTTAATAAAAAAGAAGGAGTTGTTACTTCCAAGGTTTCAGAAACTGGTTTGGCTTTGGAGCCAACCACCGATACCATTACCATTCCCAGACACGAGGAAGAGCTGGAGCTGGAGAGTAGAGAAGCAGAAAATGTTTTGCCTGATAATCAAGAAATTGACACAGTGGGACCTGTTCATCAAGATGCACCACTTGATCCAGAAATATTGAGGCGGGAGGAAGCAGTTACGAAAGCACAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTCAGAGCCCTTAAAGGCATAATAAGGTTACAAGCACTTATTCGTGGGCACTTGGTTAGAAGACAAGCTGTTGTTACATTATGCTGTATGTATGGAATTGTCAAATTACAAGGACTTGTTCAGGGACAAAGAGTTAGACAGTCTGATGTTGGATTTGAAATTCATGAGAAGTGCAATCTATTAAAGCTTCAGGATGACAAACCTGTCAAGCCAATTGCTATATCTGATAAAATTCTGAAGCTGTCAGCCAATAATTTCATCCGAAAGCTTATTGCTTCCTCTACTACAATAATGGCCCTGCGTTTGCAATATGTCCGCGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCGGTTTTGGAGGCCAATTCCCCAACCCAAGAAAATCCGGGATACTAAGTCTCAGAAAAAGCAGGGTAATATTGCAACTGGAGATGCTCAAACAAGCAAGTCAAAACGTACCCACAGGAAGCTTTCTACTGCAAATTTTGACCTAGCCCCAGCACAAGCAAATCCTGAATTTGAAAAACCAAAACGAAATGTAAGGAAATTTCCAAGCCAACCCTCTGATCCTGTGCTGGAAAATCCCCAAATTGAGCTTGAGAAGATTAAGCGAAACTTGAGAAAGGTTCATAACCCAGTTGTTGAGACTTCAGTTCTGTCAGAAGTTGAATCTGAGACTCAGAAGCCACATCTGGAAAAAGAAACAGTTGCCTCAAGTGTCGGTGTTTCAGAACAAGCAGTCATCAGTTCTAATGAAAGAATCAAGAAGGAAGCAATGAAAATCATTTCCAGTGAGCTGGATATTGGAATTACTGCTGGAGGTTTAGTTAGTAAGGTGTTTGACACTCCAAGCAGTTATCAGGTGAATGTGGAATCAAAGCCCTTGACAGATATTACCAGTAAAGATGAGAACATTTCTGATGATGAAATGAAAAATGAGTCCATAGATTTAGTTGAGACTAGCAAAGATGAAAATTCTCACTTAACCAATGGAGGTTTGAGTCACAAGGAAGATCAAACAGGTAGTGAAAATCAGAAACCAATCCGAAAAGCCTCAATTGTAGCTAAGCAGGAACGTGTCGAGAACGGTGCACATAATAGCCCGACAGTACCTAGTTATATGGCAGCAACTGAATCTGCCAAAGCAAAATTACGGGCTCAAGGATCCCCGAAAATTGGACAAGATGGAAGTGAGAAAAACAACAATCCTCGGCGACATTCTCTGCCATCTTTAACTAACAGCAAAATCAGTTCTCATTCACCTAGGACACAGAGGCCAGTTCATTCAGGTGGTAAAGGGGCCCACAAAAGTGACAAAGCTGTATCTTCTGTGGTTGGAAACGGCAAGGTAGTTCAAGCAGAATGGAAGAGGTAA 1752 0.4178 MGKSPGKWIKTVLFGKKSSKSNIPRGREKLVNKKEGVVTSKVSETGLALEPTTDTITIPRHEEELELESREAENVLPDNQEIDTVGPVHQDAPLDPEILRREEAVTKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQGLVQGQRVRQSDVGFEIHEKCNLLKLQDDKPVKPIAISDKILKLSANNFIRKLIASSTTIMALRLQYVRGDPNSVLSWLERWSASRFWRPIPQPKKIRDTKSQKKQGNIATGDAQTSKSKRTHRKLSTANFDLAPAQANPEFEKPKRNVRKFPSQPSDPVLENPQIELEKIKRNLRKVHNPVVETSVLSEVESETQKPHLEKETVASSVGVSEQAVISSNERIKKEAMKIISSELDIGITAGGLVSKVFDTPSSYQVNVESKPLTDITSKDENISDDEMKNESIDLVETSKDENSHLTNGGLSHKEDQTGSENQKPIRKASIVAKQERVENGAHNSPTVPSYMAATESAKAKLRAQGSPKIGQDGSEKNNNPRRHSLPSLTNSKISSHSPRTQRPVHSGGKGAHKSDKAVSSVVGNGKVVQAEWKR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03330 583 Gene3D - 99 148 - -
Vifa4g03330 583 Pfam Protein of unknown function (DUF4005) 483 563 IPR025064 -
Vifa4g03330 583 PANTHER IQ-DOMAIN 5-RELATED 1 542 - -
Vifa4g03330 583 MobiDBLite consensus disorder prediction 425 583 - -
Vifa4g03330 583 SMART iq_5 123 144 IPR000048 GO:0005515
Vifa4g03330 583 SMART iq_5 100 122 IPR000048 GO:0005515
Vifa4g03330 583 MobiDBLite consensus disorder prediction 250 321 - -
Vifa4g03330 583 MobiDBLite consensus disorder prediction 425 449 - -
Vifa4g03330 583 ProSiteProfiles IQ motif profile. 125 147 IPR000048 GO:0005515
Vifa4g03330 583 MobiDBLite consensus disorder prediction 346 375 - -
Vifa4g03330 583 Pfam IQ calmodulin-binding motif 103 122 IPR000048 GO:0005515
Vifa4g03330 583 Pfam IQ calmodulin-binding motif 125 142 IPR000048 GO:0005515
Vifa4g03330 583 MobiDBLite consensus disorder prediction 519 551 - -
Vifa4g03330 583 ProSiteProfiles IQ motif profile. 101 129 IPR000048 GO:0005515
Vifa4g03330 583 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03330 Vifa-Chr4 1042980122 1042984745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03330 1 583 IQD Protein Family AT1G74690 44.335 4.05e-129 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03330 - - gmx:100794636 823.928