Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03326 ATGGAGTCTGATTCTGGAAGATCTGGTGATGGAGATGGTGGAGTACTCAAGGAAGAGAAGAGAAGTGATGATGAAACTCATCATCATCATCATCAAGAGGAGACTATTGTTGAGGAACCACCCATTGATAGTACTGAAAAATCAATTGAGACTAGACCAATCACATCCTCTCCCAAAAATGCTAAGGTCGATGATCAGCTTGAGACAACAAAAGCTCAAATGAGTGAAGTGAGAGAAGAAAATCAACGATTAAAAATGCATCTCAGCAAAATAATGACCGAATATCGAGCGCTAGAAATGCAATTTCACAACATGGTTAAGCAAGAAACTAAAAAGAACAATGTTGATCACAATGATAATGCCCATGAAGAAATAATGGTGGAATCCGATCTTGTTTCCCTCAGCCTTGGAAGAGTTCCTAGTAGCAATATTCCGAAAATTGAAGAGAAAGTTAGCAAAGTCTCTAAGCTAGCATTGGATAATGATGATGAAGAATTTAAACAAGAGTTGGCTCTTGGATTGGATTGTAAATTTGAAACATCGAAATCAGGTAGCACAACTGAAGGATTGCCAAATCAAAATCCAAGTCCAGTGAATAGTTGTGAAGTAGTTCCAACAAAGGATGAAGAAACCGGGGTAACTTGGCCACCAAGTAAGACACCGATCAGTAATAAGACAGTGAGAGATGCAACTGAGGATGAAGTTTCTCAACAAACTCCGGCTAAGAAAGCTCGAGTTTGTGTTAGAGCAAGATGTGACACACCAACGATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGGGCTTACTACCGTTGCACAGTTGCACCATCATGCCCGGTTAGAAAACAGGTGCAAAGATGTGTGGATGACATGTCGATTTTAATCACAACATATGAAGGAACACACAACCACACTCTTCCACTTTCAGCAACAGCAATGGCATCCACAACATCGGCCGCCGCATCCATGCTATTATCAGGCTCATCAACCTCCCACTCCGGTACAATCCCCTTAACACAAACCAACAACAATCTCCATGGCCTAAACTTTTACCTACCAGACGGTTCAAAATCGAATCAACTATACCTATCCAACCCTGCACTATCATCTCAACATTCACACCCAACTATCACTCTTGACCTCACTACAAACCCTTCATCCTCATCACCATTTGTTAGGTTCAACTCAAACTACAATAACAACAACAACAACCAGTTACCAAGATACCCTTCTTCCACAAGCCTTAGCTTTAGTTCACCTGAATCCAACACAATGCATTGGAATAGCTTCCTCAATTATGCTACCACTCAGAATCAACAACCATATAATAACAACAGAAACCCTAATATTAATAATCTCAACACTTTAAACTTTGGAAGACAACAAAACACAATGGAAAATATATACCAAACCTACATGCAAAAAAACAATGGTTTACCTACAGATAGTACTATAACTGCAGCAACAAAAGCTATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTTCAACACTTATTGGAAACAACACTCAACAACAAGGGAATCATCAAAACCAAAGTGTAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCCAGTGTCTTCAAGTTCATTGCCTTCATCAAGTTCTAAAGTAATTGGTTGTGCTTCGAGTTTCTTGAACAAAACGGTGCCAGTGAACTCGCAGACAGCAAGCTTAATGTCACTGCCACCTTCTTTGCCTTTTTCTACTACCAAAAGTGCTTCTGCATCTCCTCCTGGGAATAATAATAATAACTCCAATTAG 1842 0.3979 MESDSGRSGDGDGGVLKEEKRSDDETHHHHHQEETIVEEPPIDSTEKSIETRPITSSPKNAKVDDQLETTKAQMSEVREENQRLKMHLSKIMTEYRALEMQFHNMVKQETKKNNVDHNDNAHEEIMVESDLVSLSLGRVPSSNIPKIEEKVSKVSKLALDNDDEEFKQELALGLDCKFETSKSGSTTEGLPNQNPSPVNSCEVVPTKDEETGVTWPPSKTPISNKTVRDATEDEVSQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPLSATAMASTTSAAASMLLSGSSTSHSGTIPLTQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTTNPSSSSPFVRFNSNYNNNNNNQLPRYPSSTSLSFSSPESNTMHWNSFLNYATTQNQQPYNNNRNPNINNLNTLNFGRQQNTMENIYQTYMQKNNGLPTDSTITAATKAITADPTFQSALAAALSTLIGNNTQQQGNHQNQSVGENLSQKMKWAEMFPVSSSSLPSSSSKVIGCASSFLNKTVPVNSQTASLMSLPPSLPFSTTKSASASPPGNNNNNSN 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03326 613 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 50 534 IPR044810 GO:0003700
Vifa4g03326 613 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g03326 613 Pfam WRKY DNA -binding domain 258 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g03326 613 Coils Coil 60 94 - -
Vifa4g03326 613 MobiDBLite consensus disorder prediction 208 238 - -
Vifa4g03326 613 Gene3D WRKY domain 241 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g03326 613 MobiDBLite consensus disorder prediction 48 63 - -
Vifa4g03326 613 MobiDBLite consensus disorder prediction 1 66 - -
Vifa4g03326 613 MobiDBLite consensus disorder prediction 181 200 - -
Vifa4g03326 613 SUPERFAMILY WRKY DNA-binding domain 250 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g03326 613 MobiDBLite consensus disorder prediction 1 46 - -
Vifa4g03326 613 MobiDBLite consensus disorder prediction 594 613 - -
Vifa4g03326 613 FunFam probable WRKY transcription factor 31 242 319 - -
Vifa4g03326 613 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03326 Vifa-Chr4 1041997868 1042001065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03326 74 542 WRKY Transcription Factor Family AT5G15130 42.974 1.47e-86 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g03326 WRKY 1.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03326 - - pvu:PHAVU_003G192000g 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03326 4 1041997868 1042001065 Vifa4g03326 4 1041997868 1042001065 ECH