Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03325 ATGATGAACCTTTTTCTTACCAGAGCCGCTAGGGTTTCTTCTCTTACCAAACACAATGCTGTTGCCGCTTTCAATTCCTCACGGTGTGTCCATTCGTTACCACTTGCTGCCACAGTAGAAGCAGAAGAGATATCTGGTGCAAAGCCTGCTGAAGTTTTGAACTTGGTGCAGGGCAAATGGATTGGATCATCAAACTGGAATACAATTCTGGATCCTTTAAATGGAGAGCCATTTATTAAAGTTGCTGAAGTTGAGGAATCAGACATTCAGCCCTTTGTAGAAAGCTTGTCCAGCTGTCCCAAACATGGTTTGCACAATCCCTTCAAGGCACCAGAGAGATATCTTATGTATGGAGACATAACTACTAAGGCAGCTCACATGCTATCACTTCCTAAGGTTACAGATTTCTTTGCGAAGCTAATACAGAGAGTTTCTCCAAAGAGTTATCAGCAGGCTTTTTCTGAAGTTTATGTGACAATAAAGTTTCTAGAGAATTTCTGTGGGGATCAGGTTCGCTTCCTGGCTAGGTCTTTTTCAGTACCTGGAAATCATCTTGGACAGCAAAGTCATGGCTTTCGTTGGCCATATGGTCCGGTGGCAATTATCACTCCTTTTAATTTTCCCCTAGAGATTCCAGTCCTACAATTAATGGGTGCACTTTATATGGGCAACAAGCCAGTCCTTAAAGTTGATAGCAAGGTGAGCATTGTTATGGAGCAAATGCTGCGCCTTCTTCATTCCTGTGGCTTACCCGTAGAAGATGTAGATTTCATAAATTGTGATGGCAAGACAATGAACAAGCTGCTGCTAGAGGGAAATCCAAGAATGACCCTTTTCACCGGTAGTTCAAGAGTGGCAGAGAAGCTGGCTGTTGACTTGAAGGGCCGTGTTAAATTAGAAGATGCTGGGTTTGACTGGAAAATATTGGGCCCCGATGTTCATCAGGAAGATTACATTGCATGGGTATGTGACCAGGATGCATATGCATGCAGCGGTCAAAAGTGCTCAGCACAATCGTTGTTAATTATGCACGAGAACTGGTCTAAGACTTCCTTGGTATCTAAGTTGAAAGAACTTGCTGAGAGAAGAAAGCTATCGGACTTGACAATTGGCCCAGTCCTTACTTTTACAACTGATGCGTTGCTAGAGCATACAAAAAATTTACTTGCGATACCAGGATCAAAGCTGCTCTTTGGTGGTCAGCCTTTGGAGGACCATACAATTCCACAAATTTATGGTGCTATTAAACCAACTGCAGTTTATGTTCCTCTTGAGGAAATTGTGAAGGATAAGAATTATGAGCTTGTGACAAAAGAAATATTTGGACCTTTTCAGGTTGTTACCGACTACAAAAACCATCAACTACCAATTGTGTTGGAGGCTTTGGAAAAAATGCATGCACACTTAACTGCCGCCGTAGTTTCAAACGATCCTTTATTTTTACAAGAAGTGATTGGGAAAACAGTAAATGGCACTACTTATGCAGGTCTAAGAGCAAGAACAACTGGAGCTCCACAAAACCACTGGTTTGGACCTGCTGGTGACCCTAGAGGTGCAGGAATTGGAACACCTGAGGCTATAAAACTTGTATGGTCTTGCCATAGAGAAGTAATTTATGATTATGGACCAGTATCAAAGGATTGGGAAATTCCTTCTTCAACATGA 1665 0.4216 MMNLFLTRAARVSSLTKHNAVAAFNSSRCVHSLPLAATVEAEEISGAKPAEVLNLVQGKWIGSSNWNTILDPLNGEPFIKVAEVEESDIQPFVESLSSCPKHGLHNPFKAPERYLMYGDITTKAAHMLSLPKVTDFFAKLIQRVSPKSYQQAFSEVYVTIKFLENFCGDQVRFLARSFSVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMLRLLHSCGLPVEDVDFINCDGKTMNKLLLEGNPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVHQEDYIAWVCDQDAYACSGQKCSAQSLLIMHENWSKTSLVSKLKELAERRKLSDLTIGPVLTFTTDALLEHTKNLLAIPGSKLLFGGQPLEDHTIPQIYGAIKPTAVYVPLEEIVKDKNYELVTKEIFGPFQVVTDYKNHQLPIVLEALEKMHAHLTAAVVSNDPLFLQEVIGKTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVSKDWEIPSST 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03325 554 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491
Vifa4g03325 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 495 IPR016163 GO:0016620
Vifa4g03325 554 FunFam Aldehyde dehydrogenase 12 311 499 - -
Vifa4g03325 554 CDD ALDH_F12_P5CDH 54 542 - -
Vifa4g03325 554 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 35 554 IPR044638 GO:0004029
Vifa4g03325 554 Pfam Aldehyde dehydrogenase family 68 496 IPR015590 GO:0016491
Vifa4g03325 554 SUPERFAMILY ALDH-like 54 522 IPR016161 GO:0016491
Vifa4g03325 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 45 304 IPR016162 GO:0016491
Vifa4g03325 554 FunFam probable aldehyde dehydrogenase 45 303 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03325 1 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.610 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03325 K00294 - gmx:100806579 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03325 4 1040700760 1040706900 Vifa4g03325 4 1040700760 1040706900 ECH