Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03324 ATGGTTGAGGATATTAACATTGATGAATTGGGTGCGGATCCTTCAGGGCGGACAATGAAACTGCATAAGCATCCATTCGGTGAATTCTCCATGGCTTCGGTACAGGCAAATGAAAAGATGGAAGATTTCGGCCAGGTTGAGATTGGCAACAATGCAATTTTTGTTGGAATTTATGATGGCCAAAATGGCATCTTTGCTTCCCAATATCTGAAGGAGAACCTCTTCCCGGCTCTACTATGTCATATGGATCAGAATGATAACAATATGTCTGAAGATATTCTGAGGGAAACTGTTGCTGCAATGGAGAGAAGGTTTATGCTTGATGCTGATAAGTTACATGACAGGGAGCCGCAGCGAGCTGTGACTAGTTCTAGCTGTTTGTTTTGTATTATATGGAACGGGAAACTGTATGTCGCTAACGTTGGAGGCTCCCGTGCTGTAATGGGTTCTTCGGGTCTATTTGATACACTCCGTGTTCAGCAGTTGGTCAGAGATCACAATGCTGGTAACAAGCATGTTCAAGATGAACTCGCGAGATTGCATCCGGATGATCCAGATATTGTCATGTATCATAATGAGGCATGGAGTGTTGCAGGCGTAAGCGAGGTGAGCAGATGTATAGGAAATGCATATTTGAAGCGGGCGCGTTTCACTTTAGTCCCATCCTTCGAAGTATCGCGCACAGAACTTGCGCCTTCTGATTTTACCCGACCTTTGCTATCAGCAGAACCCGAGATATACTCAAGAGTCTTAAGAGACAATGATAAATTCATCATATTTGGATCTGGTGGACTTTGGAAATTCCTGACAAATGAGGAAGCGGCTAAAATTGTGAATACCAATCCACGAAAAGGAATTGCAAAGAGACTTATCAGAATTGCTCAAGAGATAGCAGCAAGAAGAAAGAATATAACCTATAGTGAGCTTTCGGCGGTTCCTAGGGGTGGAAGGTGTGGTTATCATGATGATATCGTCGTGACTGTTGTATTTCTCGACAAAAAGCCAGATGTGATCACCTCCGTGCCAAGGATCAATTCCTCCCAAAGCTTCTTTGAAGCGGCTCTTCGTTCGAATTTTCACTATGTGTATGCTGGTGGTAACTCAGCTCTTTGTCCGGGTTTGGAATATTATGCCTAG 1137 0.4362 MVEDINIDELGADPSGRTMKLHKHPFGEFSMASVQANEKMEDFGQVEIGNNAIFVGIYDGQNGIFASQYLKENLFPALLCHMDQNDNNMSEDILRETVAAMERRFMLDADKLHDREPQRAVTSSSCLFCIIWNGKLYVANVGGSRAVMGSSGLFDTLRVQQLVRDHNAGNKHVQDELARLHPDDPDIVMYHNEAWSVAGVSEVSRCIGNAYLKRARFTLVPSFEVSRTELAPSDFTRPLLSAEPEIYSRVLRDNDKFIIFGSGGLWKFLTNEEAAKIVNTNPRKGIAKRLIRIAQEIAARRKNITYSELSAVPRGGRCGYHDDIVVTVVFLDKKPDVITSVPRINSSQSFFEAALRSNFHYVYAGGNSALCPGLEYYA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03324 378 SMART PP2C_4 20 329 IPR001932 -
Vifa4g03324 378 Gene3D - 12 336 IPR036457 -
Vifa4g03324 378 CDD PP2Cc 29 331 IPR001932 -
Vifa4g03324 378 ProSiteProfiles PPM-type phosphatase domain profile. 28 331 IPR001932 -
Vifa4g03324 378 SUPERFAMILY PP2C-like 23 333 IPR036457 -
Vifa4g03324 378 PANTHER PROTEIN PHOSPHATASE 26 329 IPR015655 GO:0004722|GO:0006470
Vifa4g03324 378 Pfam Protein phosphatase 2C 51 299 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03324 Vifa-Chr4 1040694394 1040695717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03324 20 345 PP2C-type Phosphatase Gene Family AT5G06750 45.181 7.03e-94 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03324 K01102 - tpra:123896634 373.629