Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03321 ATGGAAACCAACAAGCTTAGATTGCTTTTTTTGTATGTATTTTATCTTGCTATATTCCCTACCTTTGAAGCTAACATAATTCACTTCGACCAACACTGGCAACGACGATCTGATGAAGCCACAAAGGCTGCACATAAGGCTTATCAGTTAAACCCTCAGGGTGTTGCTGCAACTTTCAATAACCATGTCCACGGGGTTTTCAGTGGTTACAATGCTACACGGAGGAGTTTATCCAGAAAGACGAAAAGCTTAGGTCCATGCAAAGCCACAAATCCGATTGATAGCTGCTGGAGATGTGATCCTAATTGGGAAAAGAATCGCAAGAAGCTAGCAGATTGTGCTCTAGGTTTTGGTCACGGCACGACAGGAGGCAAGGATGGTAAAATCTATGTTGTCACGGATCCATCCGACAACGACCTTGTTAACCCGAAACCAGGGACATTGCGACACGCAGCCATTCAAAGAGAGCCTTTATGGATCATTTTTAAACAGAGCATGACCATCAGATTGAAAGCGGAGCTTCTACTAACAGATCACAAGACAATAGATGCACGTGGTGCAAATGTTCATATTAGTGGAGGTGCTCAAATAACAATGCAATATGTGAAAAATATCATCATTCATGGGTTACACGTCCATGATATTAAACCAGTTAGTGGTGGACTGATGAGAGACTCGATGAGTCACTTTGGACAACGTTCGACTAGTGATGGTGATGGAATATCAGTGTTTGGATCTAGTCATATTTGGATAGATCACATTTCAATGTGGAATTGTTTTGATGGTTTGATTGATGTCGTAGCGGGATCAACCGCTATAACCATTTCCAACTGTCATATGACACGACAAGACCATGTTATGTTATTTGGAGCAAGTGATCTGTTCTCGGGAGATAAAATAATGCAAATAACAGTAGCTTTCAATCATTTTGGGAAAGGATTGATACAGAGAATGCCGAGGTGCAGATGGGGTTTCTTTCATATTGTTAACAATGACTATACTCATTGGCTTATGTATGCGGTTGGTGGTAGCACACATCCCACTATACTGAGCCAGGGTAACAGGTTTATTGCTCCTGTAGACCGAAATGCAAAAGAGGTGACAAAGAGGGATTATTCACCTGAAAGTGTGTGGAAGAATTGGAATTGGATATCAGAGAACGACTTGATGATGAATGGAGCGTTTTTTAAACAGTCTGGGAAAAAGGTTGCAATGCCGAATGATAATATCCCGGCAAAGCATGGGAGTTTTGCAGCAGAAATTACTAAATATGCAGGTTCTGTAAAATGTGTACCAAACAACCCATGTTGA 1311 0.4127 METNKLRLLFLYVFYLAIFPTFEANIIHFDQHWQRRSDEATKAAHKAYQLNPQGVAATFNNHVHGVFSGYNATRRSLSRKTKSLGPCKATNPIDSCWRCDPNWEKNRKKLADCALGFGHGTTGGKDGKIYVVTDPSDNDLVNPKPGTLRHAAIQREPLWIIFKQSMTIRLKAELLLTDHKTIDARGANVHISGGAQITMQYVKNIIIHGLHVHDIKPVSGGLMRDSMSHFGQRSTSDGDGISVFGSSHIWIDHISMWNCFDGLIDVVAGSTAITISNCHMTRQDHVMLFGASDLFSGDKIMQITVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAVGGSTHPTILSQGNRFIAPVDRNAKEVTKRDYSPESVWKNWNWISENDLMMNGAFFKQSGKKVAMPNDNIPAKHGSFAAEITKYAGSVKCVPNNPC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03321 436 Gene3D - 90 429 IPR012334 -
Vifa4g03321 436 Pfam Pectate lyase 187 356 IPR002022 -
Vifa4g03321 436 PANTHER PECTATE LYASE 18-RELATED 40 433 IPR045032 GO:0030570
Vifa4g03321 436 SUPERFAMILY Pectin lyase-like 91 426 IPR011050 -
Vifa4g03321 436 SMART amb_all 165 362 IPR002022 -
Vifa4g03321 436 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Vifa4g03321 436 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Vifa4g03321 436 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Vifa4g03321 436 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Vifa4g03321 436 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Vifa4g03321 436 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Vifa4g03321 436 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Vifa4g03321 436 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03321 Vifa-Chr4 1040628560 1040630044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03321 1 436 Polysaccharide Lyase AT3G01270 53.263 9.93e-178 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03321 K01728 - gmx:100801864 665.225