Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03311 ATGGCTGGTGGAAGACTCTTTACGAATTCTCCTGCAAATAATTCAAACATGAATACTTTGTTTCATAATCAACAACATGGAAACTCTTCTCAACAACCTCTTGATTCTCTCTTCCTTTCTTCTTCTCTTCCTTTCTTCGGTTCAAGAACTATGGTGAGTTTTGAAGATGTTCAAGGAGGGAGGAAAAGGTGCAACAATTATCTCTTCAACGGATTCGATCTAGACGAAAACGGAGACGATGAGATGGATGAGTACTTTAGTCAATCGGAGAAGAAGCGGCGTCTCTCTGTGGAACAAGTTCAGTTTCTTGAGAAAAGCTTCGAGGTTGAGAACAAGCTTGAACCAGATAGGAAAACCAAGATAGCGAAAGATCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAGAACCGTCGTGCAAGATGGAAGAACAAACAGCTTGAGAAGGATTATGAATCTCTTAATGATAGTTATGAGTCTCTTAAGATTGATTATGATAACATCCTCAAGGAAAAACACAGGTTACAAGCTGAGGTGGAAAGTCTCTCTAAAAAGGTACTTGCAAGAGAGAATCAAGAGGGGAAAAGTGAAACAAAGAAACTATTGCAGGAACCAGTAATGAATAAACCATTGGTGGATTCAGTTTCTGAGGGTGAAGGATCAAAATTGTCAATTGTTGAGGCTTGTAATGAAAGTAATAATAACAACAGACAAGAAGATATAAGTTCAGCAAGGAGTGAGATGTTGGATTGTGACAGTCCATGTTACAAGGATAGAGTGTTGCAGAGAAATGTATTTGAACCTGAATATCAATCAGACCTGTCACAAGATGATGAAGATAATTTGTTGCCTCCTTATAACATCTTTACAAAACTCCAAGATGTTCATTACTCAAACCCCCATCATATTCATAACTCGTCTGGTTATGGATTTCAAGAGGACGATCATGATCATGATCACGATCACGCTCTTTGGTCGTGGTCCGGTTACTAG 996 0.3916 MAGGRLFTNSPANNSNMNTLFHNQQHGNSSQQPLDSLFLSSSLPFFGSRTMVSFEDVQGGRKRCNNYLFNGFDLDENGDDEMDEYFSQSEKKRRLSVEQVQFLEKSFEVENKLEPDRKTKIAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYESLNDSYESLKIDYDNILKEKHRLQAEVESLSKKVLARENQEGKSETKKLLQEPVMNKPLVDSVSEGEGSKLSIVEACNESNNNNRQEDISSARSEMLDCDSPCYKDRVLQRNVFEPEYQSDLSQDDEDNLLPPYNIFTKLQDVHYSNPHHIHNSSGYGFQEDDHDHDHDHALWSWSGY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03311 331 Coils Coil 138 193 - -
Vifa4g03311 331 Pfam Homeobox associated leucine zipper 146 187 IPR003106 GO:0006355|GO:0043565
Vifa4g03311 331 FunFam homeobox-leucine zipper protein ATHB-6-like 94 140 - -
Vifa4g03311 331 Gene3D - 84 154 - -
Vifa4g03311 331 Pfam Homeodomain 91 145 IPR001356 GO:0003677
Vifa4g03311 331 SUPERFAMILY Homeodomain-like 77 148 IPR009057 -
Vifa4g03311 331 CDD homeodomain 91 147 IPR001356 GO:0003677
Vifa4g03311 331 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Vifa4g03311 331 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Vifa4g03311 331 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Vifa4g03311 331 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Vifa4g03311 331 SMART HOX_1 89 150 IPR001356 GO:0003677
Vifa4g03311 331 MobiDBLite consensus disorder prediction 1 33 - -
Vifa4g03311 331 MobiDBLite consensus disorder prediction 7 33 - -
Vifa4g03311 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 78 241 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03311 Vifa-Chr4 1038427725 1038428912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03311 26 206 Homeobox Transcription Factor Family AT3G01470 45.109 6.09e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g03311 Homeodomain 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03311 - - mtr:11437653 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03311 4 1038427725 1038428912 Vifa4g03311 4 1038427725 1038428912 ECH