Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03297 ATGGCTGAAGAACAAAAGCCTGAAACGTTAGAAGCTGTTCTTAAAGAAACTGTTGATTTGGAGAATATACCCATTGATGAGGTTTTTGAGAATCTGAGATGTAGTAGAGAAGGGCTTACTAGTGAGGCTGCTGAGCAGAGGCTAACTATTTTTGGACATAACAAGCTTGAAGAGAAGAGAGAGAGTAAGCTGTTGAAGTTTTTGGGATTTATGTGGAATCCTCTCTCATGGGTTATGGAGGCAGCTGCTATAATGGCGATAGCTCTTGCAAATGGAGGGAACAAAGCTCCTGATTGGCAAGATTTTGTGGGTATTATCACCTTGCTTATCATCAATTCAACCATTAGTTTTATTGAGGAGAACAATGCTGGTAATGCTGCTGCAGCTCTTATGGCTAGTCTTGCTCCGAAAGCTAAGGTTCTTCGAGATGGTAGGTGGAGTGAGCAAGATGCTGCGATCCTGGTTCCTGGTGACATCATCAGTATCAAACTTGGAGATATTGTTCCTGCAGATGCTCGTCTTCTTGAAGGAGATCCTTTGAAAATTGACCAGTCTGCACTCACAGGTGAGTCCCTGCCGGTGACAAAGGCTCCTGGTGATGGTGTTTATTCTGGTTCTACCTGCAAACAAGGAGAGATTGAATGTGTTGTCATAGCTACTGGTGTTCATACCTTTTTCGGTAAAGCTGCTCACCTTGTGGATACTACAAATCAAGTCGGTCATTTTCAAAAGGTCTTGACTGCAATCGGAAACTTCTGCATATGTTCGATTGCTGTGGGGATGCTTATTGAGCTTGTTGTTATGTATCCCATCCAACATCGTCGCTATCGTCCTGGAATTGATAACCTCCTTGTGCTTCTCATTGGAGGAATTCCAATTGCCATGCCCACAGTTTTGTCAGTGACCATGGCCATTGGATCTCACAGGCTATCTCAGCAGGGGGCTATCACAAAGAGGATGACAGCCATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGAACTCTAACATTAAATAAGCTTACGGTTGACAAAAATCTTGTTGAGGTTTTTGCAAAAGGAGTGGATGCTGAAACCGTCGTTTTGATGGCGGCTCGAGCTTCAAGACTTGAGAATCAAGATGCAATAGATACTGCCATAGTTGGGACGCTCGCTGATCCAAAGGAGGCACGTGCTGGCATACAAGAAGTACATTTTCTTCCGTTCAATCCTACCGATAAGCGGACAGCATTGACTTATACGGACCAAGAGGGTAAAATGCATAGAGTTAGCAAAGGTGCACCGGAACAGATCCTAAATCTGGCACACAATAAGACAGACATTGAACGCAGAGTTCATGCAGTAATAGATAAGTTTGCAGAGCGTGGGTTGCGGTCTCTTGCTGTTGCATACCAAGAAGTTCCAGAGGGAAGGAAAGAGAGTCCTGGAAGCCCGTGGCAATTTATCGGACTCATGCCGCTTTTCGATCCACCAAGACATGATAGTGCCGAAACAATACGGAGGGCATTGAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGTCGACGCTTGGGAATGGGTACCAATATGTATCCTTCATCTGCTTTACTTGGGCAGCACAAGGATGAATCCATTGCTGCCTTACCCGTTGATGATCTAATAGAAAAGGCTGATGGATTTGCTGGCGTATTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTGCAAGCTAGGAAACATATTTGCGGAATGACCGGTGATGGAGTGAATGATGCACCTGCTCTCAAGAAGGCAGACATTGGTATAGCTGTTGCAGACGCTACTGATGCAGCTCGTAGTGCATCTGATATTGTTTTAACTGAACCTGGCCTTAGTGTTATTATAAGTGCTGTTTTGACCAGCCGAGCTATCTTCCAGAGAATGAAAAATTATACAATTTATGCAGTCTCAATTACAATTCGTATTGTGCTTGGTTTCATGTTGTTGGCTCTGATATGGAAGTTTGACTTTCCGCCTTTTATGGTGCTTATCATTGCCATCCTAAACGATGGTACTATTATGACAATATCGAAAGATAGGGTAAAACCATCGCCTCTTCCAGATAGCTGGAAGCTATCCGAGATATTTACTACTGGCGTTGTGCTTGGTAGTTACTTGGCAATGATGACAGTTATATTCTTCTGGGCAGCGTACAAAACGGATTTTTTCCCGAAAGTGTTTGGAGTTGCGACTCTTGAAAAATACGCTCACGATGATTTCCGAAAACTCGCCTCTGCAATCTATCTTCAAGTGAGCACTATTAGTCAGGCACTTATATTTGTAACTCGATCCCGAGGTTGGTCATACGTTGAGCGCCCCGGTTTATTGCTGGTTGCTGCATTTATTGTCGCCCAACTTATTGCAACATTGATTGCGGTTTATGCTAGCTGGAGTTTTGCTGCAATTGAAGGAATAGGTTGGGGTTGGGCTGGTGTTATCTGGCTATACAACATAATATTCTATATCCCGCTCGATTTCATTAAATTTTTCACTCGCTATGCTTTGAGCGGAAGGGCTTGGGATCTTGTCATTGAGCAAAGGATTGCTTTCACAAGGCAAAAGGACTTTGGGAAGGAACAACGTGAGCTTCAATGGGCACATGCGCAAAGAACGCTGCACGGATTACAACCACCAGACACCAAGATGTTCACCGAGCGAACTCATGTCACCGAACTCAATCAAATGGCCGAAGAAGCTAAAAGGAGAGCCGAAATTGCAAGGTTGAGAGAGCTTCATACACTGAAGGGTCATGTAGAATCAGTTGTGAGATTGAAGGGACTTGACATAGACACCATTCAGCAAGCATATACAGTTTAA 2877 0.4393 MAEEQKPETLEAVLKETVDLENIPIDEVFENLRCSREGLTSEAAEQRLTIFGHNKLEEKRESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGNKAPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMASLAPKAKVLRDGRWSEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKAPGDGVYSGSTCKQGEIECVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMLIELVVMYPIQHRRYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDAETVVLMAARASRLENQDAIDTAIVGTLADPKEARAGIQEVHFLPFNPTDKRTALTYTDQEGKMHRVSKGAPEQILNLAHNKTDIERRVHAVIDKFAERGLRSLAVAYQEVPEGRKESPGSPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQHKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFTTGVVLGSYLAMMTVIFFWAAYKTDFFPKVFGVATLEKYAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVAAFIVAQLIATLIAVYASWSFAAIEGIGWGWAGVIWLYNIIFYIPLDFIKFFTRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHVTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03297 958 Pfam Cation transporter/ATPase, N-terminus 22 85 IPR004014 -
Vifa4g03297 958 FunFam Plasma membrane ATPase 486 640 - -
Vifa4g03297 958 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 855 IPR023298 -
Vifa4g03297 958 CDD P-type_ATPase_H 38 849 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vifa4g03297 958 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g03297 958 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g03297 958 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g03297 958 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g03297 958 PRINTS H+-transporting ATPase (proton pump) signature 768 789 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g03297 958 Gene3D - 345 492 IPR023299 GO:0000166
Vifa4g03297 958 PANTHER CALCIUM-TRANSPORTING ATPASE 21 891 - -
Vifa4g03297 958 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Vifa4g03297 958 FunFam ATPase 4 plasma membrane-type 577 823 - -
Vifa4g03297 958 FunFam Plasma membrane ATPase 136 220 - -
Vifa4g03297 958 SFLD p-type atpase 315 643 IPR044492 -
Vifa4g03297 958 NCBIfam HAD-IC family P-type ATPase 105 351 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g03297 958 NCBIfam HAD-IC family P-type ATPase 567 680 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g03297 958 SFLD C1.7: P-type atpase like 315 643 - -
Vifa4g03297 958 Gene3D - 136 220 - -
Vifa4g03297 958 SUPERFAMILY HAD-like 329 639 IPR036412 -
Vifa4g03297 958 Gene3D - 907 958 - -
Vifa4g03297 958 Gene3D - 330 629 IPR023214 -
Vifa4g03297 958 Gene3D - 98 823 - -
Vifa4g03297 958 Pfam E1-E2 ATPase 134 312 - -
Vifa4g03297 958 SUPERFAMILY Calcium ATPase, transduction domain A 136 233 IPR008250 -
Vifa4g03297 958 PRINTS P-type cation-transporting ATPase superfamily signature 183 197 - -
Vifa4g03297 958 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Vifa4g03297 958 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Vifa4g03297 958 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Vifa4g03297 958 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Vifa4g03297 958 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Vifa4g03297 958 FunFam Plasma membrane ATPase 345 492 - -
Vifa4g03297 958 Coils Coil 909 929 - -
Vifa4g03297 958 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Vifa4g03297 958 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Vifa4g03297 958 NCBIfam plasma-membrane proton-efflux P-type ATPase 38 814 IPR006534 GO:0008553|GO:0016020|GO:0120029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03297 Vifa-Chr4 1033908386 1033913583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03297 4 958 Primary Pumps ATPases AT3G47950 92.251 0.0 1783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03297 K01535 - zju:125422313 1734.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03297 4 1033908386 1033913583 Vifa4g03297 4 1033908386 1033913583 ECH