Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03296 ATGGGGAACTGCAACGTGTGTATAAAATCAGATGTAACCGGTTCAGACCGGAAAAGAAGCGACCCGAACCGGGGCAAAAAAGGAAGAAAAACCAAACCGAACCCATACTCCGACGAATCGTTAAACTCATCAGCAACGATTCGTGTTCTAAAGGATTCGAATCCGCGAAACCGAATCGGAGATAAATACGTATTAGGCCGTGAGCTCGGTCGCGGTGAATTCGGTATAACGTATCTATGTACGGACAAAGAGACGAAGCAGGAGTTGGCTTGTAAGTCGATTTCGAAGCGGAAGTTGAGGACGGCGGTGGATGTGGAGGATGTTCGGCGGGAGGCGGCGATCATGGCGACGTTGCCGGAGCATCCTAATATTGTGAAGCTGAAGGCGACTTATGAGGATGATGAGAATGTTCATCTTGTTATGGAGTTGTGTGAAGGAGGTGAGTTGTTTGATAGGATTGTTGCGAGGGGGCATTATAGTGAACGTGCTGCGGCGAATGTTGCCAGGACTATTGCGGAGGTTGTTAGGATGTGTCATGCTAATGGGGTTGTGCATAGAGACCTTAAGCCGGAGAATTTTCTTTTTGCTAATAAGAAAGAAAATTCTCCGCTTAAAGCTATTGATTTTGGCCTCTCGGTTTTCTTCAAGCCTGGGGAGAAATTTTCGGAGATTGTGGGGAGTCCTTACTATATGGCACCAGAGGTTTTGAAGAGGAAATATGGTCCAGAGGTTGATATATGGAGTGCAGGGGTGATTCTATATATTTTGTTATGTGGGGTGCCTCCGTTTTGGGCTGAGACTGAACAAGGGGTTGCTTTGGCGATTTTGAGGGGAGTAATTGACTTCAAGAGGGAGCCTTGGCCTCAGATTTCAGACAGTGCCAAAAGCCTTGTGCGACAGATGTTGGAACCTGATCCTAAAATACGTTTGACTGCCGAACAGGTGCTTGAACATCCCTGGCTACAAAATGCAAAGAAAGCTTCGAATGTTCCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTCTCGTTGATGAATAGATTCAAAAAGAGAGCTCTCCGGGTAATTGCAGAACATTTATCTCTTGAAGAAGTAGAAATAATCAAAGACATGTTTACGTTGATGGACACTGATAAAAATGGCCGAGTAACATATGAGGAACTGAAGGCTGGTTTGCAGAAGGTTGGTTCGCAACTGGCCGAGCCTGAGATAAAGTTGCTGATGGACGTGGCTGATGTTGATGGGAATGGAGTGCTTGATTATGGAGAGTTTGTAGCTGTGACAATTCACTTGCAAAGAATGGAGAACGACGAACATTTCCGCAAAGCATTCAAGTTTTTTGACAAAGATGATAATGGGTTTATCGAGTTTAGTGAACTAGAAGCAGCATTAGTTGATGACATAGGGGAAACTGATACTAATGTACTGAATGAGATCATGCGAGAAGTTGACACTGACAAGGACGGTCGCATCAGTTTTGAGGAGTTTGTGGCCATGATGAAGACGGGAACTGATTGGAGAAAAGCATCCAGGCAATATTCTAGGGAGAGATTCCAGAGCCTGAGCATAAACTTGATGAAGGACGGCTCACTTCAGCTTCATGACGGGATAAGTGGTCAAGCTGTTGTGGTTTAA 1638 0.4505 MGNCNVCIKSDVTGSDRKRSDPNRGKKGRKTKPNPYSDESLNSSATIRVLKDSNPRNRIGDKYVLGRELGRGEFGITYLCTDKETKQELACKSISKRKLRTAVDVEDVRREAAIMATLPEHPNIVKLKATYEDDENVHLVMELCEGGELFDRIVARGHYSERAAANVARTIAEVVRMCHANGVVHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGEKFSEIVGSPYYMAPEVLKRKYGPEVDIWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKIRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSLMNRFKKRALRVIAEHLSLEEVEIIKDMFTLMDTDKNGRVTYEELKAGLQKVGSQLAEPEIKLLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFKFFDKDDNGFIEFSELEAALVDDIGETDTNVLNEIMREVDTDKDGRISFEEFVAMMKTGTDWRKASRQYSRERFQSLSINLMKDGSLQLHDGISGQAVVV 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03296 545 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Vifa4g03296 545 Gene3D Transferase(Phosphotransferase) domain 1 149 330 - -
Vifa4g03296 545 Gene3D - 331 505 - -
Vifa4g03296 545 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03296 545 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Vifa4g03296 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 494 - -
Vifa4g03296 545 Pfam EF-hand domain pair 369 428 IPR002048 GO:0005509
Vifa4g03296 545 Pfam EF-hand domain pair 439 502 IPR002048 GO:0005509
Vifa4g03296 545 FunFam calcium-dependent protein kinase 13 149 329 - -
Vifa4g03296 545 Gene3D Phosphorylase Kinase; domain 1 64 148 - -
Vifa4g03296 545 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Vifa4g03296 545 SUPERFAMILY EF-hand 345 514 IPR011992 -
Vifa4g03296 545 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03296 545 FunFam Calcium-dependent protein kinase 1 65 148 - -
Vifa4g03296 545 CDD STKc_CAMK 62 320 - -
Vifa4g03296 545 MobiDBLite consensus disorder prediction 9 43 - -
Vifa4g03296 545 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Vifa4g03296 545 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Vifa4g03296 545 SUPERFAMILY Protein kinase-like (PK-like) 38 348 IPR011009 -
Vifa4g03296 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Vifa4g03296 545 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Vifa4g03296 545 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Vifa4g03296 545 MobiDBLite consensus disorder prediction 12 34 - -
Vifa4g03296 545 CDD EFh 440 502 IPR002048 GO:0005509
Vifa4g03296 545 Pfam Protein kinase domain 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03296 545 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Vifa4g03296 545 SMART efh_1 368 396 IPR002048 GO:0005509
Vifa4g03296 545 SMART efh_1 404 432 IPR002048 GO:0005509
Vifa4g03296 545 SMART efh_1 476 504 IPR002048 GO:0005509
Vifa4g03296 545 SMART efh_1 440 468 IPR002048 GO:0005509
Vifa4g03296 545 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Vifa4g03296 545 FunFam Calcium-dependent protein kinase 7 330 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03296 Vifa-Chr4 1032909565 1032913465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03296 1 545 EF-hand Containing Proteins AT1G74740 76.417 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa4g03296 Pkinase 1.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03296 K13412 - gmx:100779935 933.324