Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03295 ATGGGACACAAAAAGCGATACTCTGCTCCTCGTTCCAAACCTTCGCCGGCGGCTTCTCCGGTGACTCAATCTCCCATCGGCGGAGCCGCCAAAGGTTCTACTTCACCCGACTCCGATGCCACCAACGTTTTCGATCAGAATCTCACTAACCCTAGCAAGAACGAATTAGTTCCTTTTCAATCCGAGGGTTCTGATTTCTCTGCGATTAAGGTAGAATGTGAGCGTGCCCTAACCACGTTTCGTCGTGGTAACCATAATAGGGCGATGAAGCTCATGAAGGAGTTGTGCTTGAAGGAGGAGGGTTCGCCTTACTCGGCGTTTGTTTATCGAATTCATGGATTTATATGTTTCAAAGTGGCTTCGATTATTACTGATTGTAGCGCGAAGCAGCGGCATTTGAAGCATGCTGTTGAATCGGCTAGGAGAGCTGTTGAGCTTTCGCCCAATTCGATTGAGTATGCACATTTTCATGCTACTGTAATATTGGAAGCGGCGACTGAGGCAAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAACCCAAATGATCCTGCTAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGTGTCTAGTTTGGAAGACCGGATATTACATGTGCAGGCTGAGTTGAGGCAGCTGATTCAGAAGTCTAACATAGCTTCATTGTCGTCTTGGATGAAAAATCTGGGTAATGGGGAAGAGAGGTTTCGCTTGATTCCTATAAGGAGGGCTACGGAGGACCCTATGGAGGTTAGGTTAGTTCAGGCTAGAAGGCCAAATGAGATTAAGAAGGTTACCAAGACGCCTGAGGAAAGAAGAAAAGAGATCGAAGTTAGGGTAGCTGCTGCAAGACTGTTGCAGCAGAAGTCAGAGTCACCGCAGGCTCCGAATGAAGGAGAAAGGGATGACAGGGCATTGGATTTGTCTTCAGGGTCTAGTCAGAGGGTAGGTGAGAGGCGAAGGCATATGAGAAAAAATGGCTCTACAGCCGAAAGGAGAAAGTGGGTGCTATCTTATTGGGATTCAGTGAGTATGGATGTGAAGAAGGACTGCCTTAGGATTAAAATATCTGATATCATCTCCCATTTTGGCTCTTCAAAGGAGACTTTGCCAAAAGATGTTTTATCAGAAGCTTTGTTATATGCCGAAGCCAATAAAACATGGAAATTTTGGGTTTGTGGCATTTGTACCGAGATATTTTCCAATCCGGAAGGTCATAGGCAGCATGTTATGCAGGCACACCTTCAGACTCTCTCGCCAAAAATGCAGAGAATTTTGCCTCAACATGTTGACAATGAATGGCTTGAGATGATTCTTAATTGCTCCTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGCTTGACTGTAAAGCTAATCTCAAAGGTTCATCTCTTCCAGAGGATTATCTTGCTCAGGGCTACAATGTTTGTTTTAAAGATTCAACCAGCTCATACCATGAAAAAGAAAGTTTAGGGTACAGTTTTGGTAATTGTACAACAGAAAGAAGCAAGTATTATAAAATTGCTGAAAGTAATGCCAGAGAAGGCATTGAAGACCAACAGTTTATGGCAAATCCTGTTACTGATTGTTGGCCAGTTTCCGATGACAAGGAGCGTGCAAAACTTCTAGAGAAAATCCATGGAGTATTTGAAATGCTTATTAGACACAAATGTATTGCTGCAAGTCATCTTCAGAAGGTCATACAATTTAGTATGGGTGAGATCCAAGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAACTTAAGAAAATTCTCCAATTTCTGCAGGAAATGTCTCATGCTTGTGGGTTGGGTAGATATGCTGATAAAAGTAGTAGTCCCAAGAATGATTTGCATGATATCATCCAAAGTCCTGAGATCAGAGAGAAAATTGTTCTCAATGGAGATGCATCATGCCTTCTCCTGGATGAGTCTCTACTGCTAACACAATTCACTCCTGGTACAGCCCAGGAGTCTGTCTTTGAGGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAGTAATGGTGCTTTTCTTTCCTGGCTATATTCAAGTCGGTCTATTGGGGATCAATTGTCTACATGGATTCAGACCAAAGAAGATAAAATATGCCAAGGGCAAGAAATGGTCCGGACACTTGACAAGGAGTTTTATCAATTACATAGTTTGTGTCAAAAGAAGTGTGACCGTTTAGCTTATGAGGAAGCACTACAGACAATTGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGGGAATGTGGATGAGTTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAAAGGCGGAGGGAAGAGATTGCTGAGAGTGAAAATGAAATGGCGTATACTGGCAGTAGGTTTGAGATGGAATGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATAATCAATATTGCTGTGATGAAACTTATCCTGGCGTGACTTCTCAGATATGTGACTTGGAATCCGGTGAAAATGATGAATGGAGAATGAAGGACTGCTTGCATCAAATGGATGGCTGTGTAGAAATTGCTATTCAAAAACTGAAAGAGCATGCATCTATAGAGATTAGCAAAGCTGACGCTGAGATAATAAGATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGACTTGTTTCTGCCAATGATTATCGAGCAATACTTGTGCCTCTTGTGAAGGTGTACCTAAAGACACTTTTGGAAGATTTGGCTGAGAAATATGCTAGGGAGAAATCTGATGCTGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTGGCAAAGGGGGAAATGAGAGCACGAGACACGTGGAGAAGACAAAGGATAAGAAGAAGAATAAAGATCACAGAAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATGCATCCCTTGCTTCAGTCTACTACTCTTGATTGCAGTTCTGATCTAGTATCGCCTGATAGTGACTTTCAAGATCATGAGATTATTTCCATGAATGATGTTGATTTGGAACACCACGAAGATGATTTTAGACGTAAAATTGAGCTTGAAGAGGAGGAAAAAAAGCTTGAAGAAACCTTGGAACTTCAAAGGAGGATTGAAAATGAGGCCAAACAGAAGCACCTTGCTGAGCAACAGAAGAAATTATCTGGTACATGTGTAGAAGAAGTGTCAGACAAACTTCAAGGTTGTCGATTGAAGCCTGTTGTAGATGGCTCAGATGCACAAGAATATGGAAGACTACCTGTGCAGGAACAGTTGGGAAAGGAGAACGGATGCCCAAACAATCTGGACGTCTTGCTTATTACCGCAGCAAATGGTTCCATGGCGCCGACTAAATCTTTGGCTGATTCAGCTCCCGCCAAAATTAATCACTTGCATCAGTCAAAAGTTAACCAAGATATACCCAATGGAATTGTTCCAGAGAATGGTCTACCTTTGCCTGATCGGCGTGCAGGAAAAAAACATAAGCGGAATAAGAATTCGTCTAAAATGGTTGATGGAAAGTTGGAGTATGTCTCATTGGAGGTAAATGAGAATATTGAGGATAAACATACTGACTATCACATGAGAGAGCAGGCTAAGTTTCATAACAGTCAAGATGCCAAACATTTGTTGGAAAGCAATGGAGTAAAGGTGATGAAAGAATTGCAAGTAGAAGATGAGGAGGAGGAAAGATTCCAAGCCGATCTTAAAATGGCTGTTCGCCAAAGCCTAGACACATATCAAGCACGTGGAAATTTGCCTTTGGTTTCAAGTTTAAGGATGCCACAGAGATCTTCCTCACAGGTAGACCGTTCAGGTCTTGCACCTTTGGAAGATTCAGCTCAGGACGTGAATGGAGCTAGTTTACTTGGTACAGGACTGATGAATGAAGTGGGGGAATATAATTGTTTCCTCAATGTTATTATTCAGTCTTTGTGGCATTTAAGCCGCTTTCGGGTGGAATTTCTTGGCAAATCAAGATCAGAGCATGCTCATGTGGGTAATCCCTGTGTTGTCTGTGCCCTGTATGAAATATTTACCGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAATCTATATCCACAGAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGATGAACTGCTACCATTGTGATCTTGAGTCCAGACGTTTGAAGTATACTTCTTTCTTTCACAATATAAATGCCAATGCCCTTAGGACAATGAAGGCTATGTTTCCTGAGAGCTCCCTTGACAGGCTTTTGAATCTTGTGGAGAGGAACCATCAACTGGCTTGTGATCTAGAGGCCGGGGGATGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAGCTCCGCCCAATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAGTGTTGATGACATAACTGCAACTCTGGCAGCCCTGAGCACCAAGATAGATATCAGCGTCCTTTATCGTGGTTTAAGTCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGTCGTGACCACGGCCAATGGATTATGTATGATGACAAGACTGTTAAGGTAATTGGTGGATGGGCTGATGTTCTTACTATGTGTGAGAGAGGACATCTCCAGCCTCAGGTTCTCTTCTTTGAAGCTGTAAACTAG 4791 0.4279 MGHKKRYSAPRSKPSPAASPVTQSPIGGAAKGSTSPDSDATNVFDQNLTNPSKNELVPFQSEGSDFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEEGSPYSAFVYRIHGFICFKVASIITDCSAKQRHLKHAVESARRAVELSPNSIEYAHFHATVILEAATEAKDYEDVVHECERGLAIENPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLGNGEERFRLIPIRRATEDPMEVRLVQARRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQAPNEGERDDRALDLSSGSSQRVGERRRHMRKNGSTAERRKWVLSYWDSVSMDVKKDCLRIKISDIISHFGSSKETLPKDVLSEALLYAEANKTWKFWVCGICTEIFSNPEGHRQHVMQAHLQTLSPKMQRILPQHVDNEWLEMILNCSWKPLDVSAAVKMLDCKANLKGSSLPEDYLAQGYNVCFKDSTSSYHEKESLGYSFGNCTTERSKYYKIAESNAREGIEDQQFMANPVTDCWPVSDDKERAKLLEKIHGVFEMLIRHKCIAASHLQKVIQFSMGEIQGLAAGSELLKHDVDQTPMCICFLGASQLKKILQFLQEMSHACGLGRYADKSSSPKNDLHDIIQSPEIREKIVLNGDASCLLLDESLLLTQFTPGTAQESVFEDMVTPSSPDGISDSNGAFLSWLYSSRSIGDQLSTWIQTKEDKICQGQEMVRTLDKEFYQLHSLCQKKCDRLAYEEALQTIEDLCLEEGKKRGNVDEFVQRSYESVLKRRREEIAESENEMAYTGSRFEMECISNVLQEAEAMNVNNQYCCDETYPGVTSQICDLESGENDEWRMKDCLHQMDGCVEIAIQKLKEHASIEISKADAEIIRCVSEVQQLELKLGLVSANDYRAILVPLVKVYLKTLLEDLAEKYAREKSDAAGEAFLAELALDSKKIGKGGNESTRHVEKTKDKKKNKDHRKTRDLKATSGSMHPLLQSTTLDCSSDLVSPDSDFQDHEIISMNDVDLEHHEDDFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVSDKLQGCRLKPVVDGSDAQEYGRLPVQEQLGKENGCPNNLDVLLITAANGSMAPTKSLADSAPAKINHLHQSKVNQDIPNGIVPENGLPLPDRRAGKKHKRNKNSSKMVDGKLEYVSLEVNENIEDKHTDYHMREQAKFHNSQDAKHLLESNGVKVMKELQVEDEEEERFQADLKMAVRQSLDTYQARGNLPLVSSLRMPQRSSSQVDRSGLAPLEDSAQDVNGASLLGTGLMNEVGEYNCFLNVIIQSLWHLSRFRVEFLGKSRSEHAHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPQSNFFQEAQMNDASEMNCYHCDLESRRLKYTSFFHNINANALRTMKAMFPESSLDRLLNLVERNHQLACDLEAGGCGKLNHIHHFLSAPPNVFMTVLGWQNTCESVDDITATLAALSTKIDISVLYRGLSPKSTHNLVSVVCYYGQHYHCFAYSRDHGQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFFEAVN 1596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03295 1596 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Vifa4g03295 1596 MobiDBLite consensus disorder prediction 292 334 - -
Vifa4g03295 1596 Gene3D Tetratricopeptide repeat domain 67 209 IPR011990 GO:0005515
Vifa4g03295 1596 MobiDBLite consensus disorder prediction 1 52 - -
Vifa4g03295 1596 MobiDBLite consensus disorder prediction 15 52 - -
Vifa4g03295 1596 CDD Peptidase_C19 1323 1593 - -
Vifa4g03295 1596 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1316 1595 IPR028889 -
Vifa4g03295 1596 Pfam Ubiquitin carboxyl-terminal hydrolase 1317 1572 IPR001394 GO:0004843|GO:0016579
Vifa4g03295 1596 Coils Coil 785 805 - -
Vifa4g03295 1596 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1595 - -
Vifa4g03295 1596 MobiDBLite consensus disorder prediction 962 1001 - -
Vifa4g03295 1596 Pfam Protein of unknown function (DUF629) 344 872 IPR006865 -
Vifa4g03295 1596 MobiDBLite consensus disorder prediction 1162 1191 - -
Vifa4g03295 1596 SUPERFAMILY Cysteine proteinases 1316 1593 IPR038765 -
Vifa4g03295 1596 Gene3D Cysteine proteinases 1315 1431 - -
Vifa4g03295 1596 Coils Coil 196 223 - -
Vifa4g03295 1596 Coils Coil 1042 1075 - -
Vifa4g03295 1596 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
Vifa4g03295 1596 Gene3D Cysteine proteinases 1435 1596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03295 Vifa-Chr4 1031962550 1031974804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03295 65 1593 C2H2 Transcription Factor Family AT3G47890 50.562 0.0 1478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03295 - - gmx:100799759 2212.57