Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03294 ATGGGACACAAAAAGCGATACTCTGCTCCTCGTTCCAAACCTTCGCCGGCGGCTTCTCCGGTGACTCAATCTCCCATCGGCGGAGCCGCCAAAGGTTCTACTTCACCCGACTCCGATGCCACCAACGTTTTCGATCAGAATCTCACTAACCCTAGCAAGAACGAATTAGTTCCTTTTCAATCCGAGGGTTCTGATTTCTCTGCGATTAAGGTAGAATGTGAGCGTGCCCTAACCACGTTTCGTCGTGGTAACCATAATAGGGCGATGAAGCTCATGAAGGAGTTGTGCTTGAAGGAGGAGGGTTCGCCTTACTCGGCGTTTGTTTATCGAATTCATGGATTTATATGTTTCAAAGTGGCTTCGATTATTACTGATTGTAGCGCGAAGCAGCGGCATTTGAAGCATGCTGTTGAATCGGCTAGGAGAGCTGTTGAGCTTTCGCCCAATTCGATTGAGTATGCACATTTTCATGCTACTGTAATATTGGAAGCGGCGACTGAGGCAAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAACCCAAATGATCCTGCTAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGTGTCTAGTTTGGAAGACCGGATATTACATGTGCAGGCTGAGTTGAGGCAGCTGATTCAGAAGTCTAACATAGCTTCATTGTCGTCTTGGATGAAAAATCTGGGTAATGGGGAAGAGAGGTTTCGCTTGATTCCTATAAGGAGGGCTACGGAGGACCCTATGGAGGTTAGGTTAGTTCAGGCTAGAAGGCCAAATGAGATTAAGAAGGTTACCAAGACGCCTGAGGAAAGAAGAAAAGAGATCGAAGTTAGGGTAGCTGCTGCAAGACTGTTGCAGCAGAAGTCAGAGTCACCGCAGGCTCCGAATGAAGGAGAAAGGGATGACAGGGCATTGGATTTGTCTTCAGGGTCTAGTCAGAGGGTAGGTGAGAGGCGAAGGCATATGAGAAAAAATGGCTCTACAGCCGAAAGGAGAAAGTGGGTGCTATCTTATTGGGATTCAGTGAGTATGGATGTGAAGAAGGACTGCCTTAGGATTAAAATATCTGATATCATCTCCCATTTTGGCTCTTCAAAGGAGACTTTGCCAAAAGATGTTTTATCAGAAGCTTTGTTATATGCCGAAGCCAATAAAACATGGAAATTTTGGGTTTGTGGCATTTGTACCGAGATATTTTCCAATCCGGAAGGTCATAGGCAGCATGTTATGCAGGCACACCTTCAGACTCTCTCGCCAAAAATGCAGAGAATTTTGCCTCAACATGTTGACAATGAATGGCTTGAGATGATTCTTAATTGCTCCTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGCTTGACTGTAAAGCTAATCTCAAAGGTTCATCTCTTCCAGAGGATTATCTTGCTCAGGGCTACAATGTTTGTTTTAAAGATTCAACCAGCTCATACCATGAAAAAGAAAGTTTAGGGTACAGTTTTGGTAATTGTACAACAGAAAGAAGCAAGTATTATAAAATTGCTGAAAGTAATGCCAGAGAAGGCATTGAAGACCAACAGTTTATGGCAAATCCTGTTACTGATTGTTGGCCAGTTTCCGATGACAAGGAGCGTGCAAAACTTCTAGAGAAAATCCATGGAGTATTTGAAATGCTTATTAGACACAAATGTATTGCTGCAAGTCATCTTCAGAAGGTCATACAATTTAGTATGGGTGAGATCCAAGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAACTTAAGAAAATTCTCCAATTTCTGCAGGAAATGTCTCATGCTTGTGGGTTGGGTAGATATGCTGATAAAAGTAGTAGTCCCAAGAATGATTTGCATGATATCATCCAAAGTCCTGAGATCAGAGAGAAAATTGTTCTCAATGGAGATGCATCATGCCTTCTCCTGGATGAGTCTCTACTGCTAACACAATTCACTCCTGGTACAGCCCAGGAGTCTGTCTTTGAGGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAGTAATGGTGCTTTTCTTTCCTGGCTATATTCAAGTCGGTCTATTGGGGATCAATTGTCTACATGGATTCAGACCAAAGAAGATAAAATATGCCAAGGGCAAGAAATGGTCCGGACACTTGACAAGGAGTTTTATCAATTACATAGTTTGTGTCAAAAGAAGTGTGACCGTTTAGCTTATGAGGAAGCACTACAGACAATTGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGGGAATGTGGATGAGTTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAAAGGCGGAGGGAAGAGATTGCTGAGAGTGAAAATGAAATGGCGTATACTGGCAGTAGGTTTGAGATGGAATGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATAATCAATATTGCTGTGATGAAACTTATCCTGGCGTGACTTCTCAGATATGTGACTTGGAATCCGGTGAAAATGATGAATGGAGAATGAAGGACTGCTTGCATCAAATGGATGGCTGTGTAGAAATTGCTATTCAAAAACTGAAAGAGCATGCATCTATAGAGATTAGCAAAGCTGACGCTGAGATAATAAGATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGACTTGTTTCTGCCAATGATTATCGAGCAATACTTGTGCCTCTTGTGAAGGTGTACCTAAAGACACTTTTGGAAGATTTGGCTGAGAAATATGCTAGGGAGAAATCTGATGCTGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTGGCAAAGGGGGAAATGAGAGCACGAGACACGTGGAGAAGACAAAGGATAAGAAGAAGAATAAAGATCACAGAAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATGCATCCCTTGCTTCAGTCTACTACTCTTGATTGCAGTTCTGATCTAGTATCGCCTGATAGTGACTTTCAAGATCATGAGATTATTTCCATGAATGATGTTGATTTGGAACACCACGAAGATGATTTTAGACGTAAAATTGAGCTTGAAGAGGAGGAAAAAAAGCTTGAAGAAACCTTGGAACTTCAAAGGAGGATTGAAAATGAGGCCAAACAGAAGCACCTTGCTGAGCAACAGAAGAAATTATCTGGTACATGTGTAGAAGAAGTGTCAGACAAACTTCAAGGTTGTCGATTGAAGCCTGTTGTAGATGGCTCAGATGCACAAGAATATGGAAGACTACCTGTGCAGGAACAGTTGGGAAAGGAGAACGGATGCCCAAACAATCTGGACGTCTTGCTTATTACCGCAGCAAATGGTTCCATGGCGCCGACTAAATCTTTGGCTGATTCAGCTCCCGCCAAAATTAATCACTTGCATCAGTCAAAAGTTAACCAAGCAGATATACCCAATGGAATTGTTCCAGAGAATGGTCTACCTTTGCCTGATCGGCGTGCAGGAAAAAAACATAAGCGGAATAAGAATTCGTCTAAAATGGTTGATGGAAAGTTGGAGTATGTCTCATTGGAGGTAAATGAGAATATTGAGGATAAACATACTGACTATCACATGAGAGAGCAGGCTAAGTTTCATAACAGTCAAGATGCCAAACATTTGTTGGAAAGCAATGGAGTAAAGGTGATGAAAGAATTGCAAGTAGAAGATGAGGAGGAGGAAAGATTCCAAGCCGATCTTAAAATGGCTGTTCGCCAAAGCCTAGACACATATCAAGCACGTGGAAATTTGCCTTTGGTTTCAAGTTTAAGGATGCCACAGAGATCTTCCTCACAGGTAGACCGTTCAGGTCTTGCACCTTTGGAAGATTCAGCTCAGGACGTGAATGGAGCTAGTTTACTTGGTACAGGACTGATGAATGAAGTGGGGGAATATAATTGTTTCCTCAATGTTATTATTCAGTCTTTGTGGCATTTAAGCCGCTTTCGGGTGGAATTTCTTGGCAAATCAAGATCAGAGCATGCTCATGTGGGTAATCCCTGTGTTGTCTGTGCCCTGTATGAAATATTTACCGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAATCTATATCCACAGAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGATGAACTGCTACCATTGTGATCTTGAGTCCAGACGTTTGAAGTATACTTCTTTCTTTCACAATATAAATGCCAATGCCCTTAGGACAATGAAGGCTATGTTTCCTGAGAGCTCCCTTGACAGGCTTTTGAATCTTGTGGAGAGGAACCATCAACTGGCTTGTGATCTAGAGGCCGGGGGATGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAGCTCCGCCCAATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAGTGTTGATGACATAACTGCAACTCTGGCAGCCCTGAGCACCAAGATAGATATCAGCGTCCTTTATCGTGGTTTAAGTCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGTCGTGACCACGGCCAATGGATTATGTATGATGACAAGACTGTTAAGGTAATTGGTGGATGGGCTGATGTTCTTACTATGTGTGAGAGAGGACATCTCCAGCCTCAGGTTCTCTTCTTTGAAGCTGTAAACTAG 4794 0.428 MGHKKRYSAPRSKPSPAASPVTQSPIGGAAKGSTSPDSDATNVFDQNLTNPSKNELVPFQSEGSDFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEEGSPYSAFVYRIHGFICFKVASIITDCSAKQRHLKHAVESARRAVELSPNSIEYAHFHATVILEAATEAKDYEDVVHECERGLAIENPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLGNGEERFRLIPIRRATEDPMEVRLVQARRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQAPNEGERDDRALDLSSGSSQRVGERRRHMRKNGSTAERRKWVLSYWDSVSMDVKKDCLRIKISDIISHFGSSKETLPKDVLSEALLYAEANKTWKFWVCGICTEIFSNPEGHRQHVMQAHLQTLSPKMQRILPQHVDNEWLEMILNCSWKPLDVSAAVKMLDCKANLKGSSLPEDYLAQGYNVCFKDSTSSYHEKESLGYSFGNCTTERSKYYKIAESNAREGIEDQQFMANPVTDCWPVSDDKERAKLLEKIHGVFEMLIRHKCIAASHLQKVIQFSMGEIQGLAAGSELLKHDVDQTPMCICFLGASQLKKILQFLQEMSHACGLGRYADKSSSPKNDLHDIIQSPEIREKIVLNGDASCLLLDESLLLTQFTPGTAQESVFEDMVTPSSPDGISDSNGAFLSWLYSSRSIGDQLSTWIQTKEDKICQGQEMVRTLDKEFYQLHSLCQKKCDRLAYEEALQTIEDLCLEEGKKRGNVDEFVQRSYESVLKRRREEIAESENEMAYTGSRFEMECISNVLQEAEAMNVNNQYCCDETYPGVTSQICDLESGENDEWRMKDCLHQMDGCVEIAIQKLKEHASIEISKADAEIIRCVSEVQQLELKLGLVSANDYRAILVPLVKVYLKTLLEDLAEKYAREKSDAAGEAFLAELALDSKKIGKGGNESTRHVEKTKDKKKNKDHRKTRDLKATSGSMHPLLQSTTLDCSSDLVSPDSDFQDHEIISMNDVDLEHHEDDFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVSDKLQGCRLKPVVDGSDAQEYGRLPVQEQLGKENGCPNNLDVLLITAANGSMAPTKSLADSAPAKINHLHQSKVNQADIPNGIVPENGLPLPDRRAGKKHKRNKNSSKMVDGKLEYVSLEVNENIEDKHTDYHMREQAKFHNSQDAKHLLESNGVKVMKELQVEDEEEERFQADLKMAVRQSLDTYQARGNLPLVSSLRMPQRSSSQVDRSGLAPLEDSAQDVNGASLLGTGLMNEVGEYNCFLNVIIQSLWHLSRFRVEFLGKSRSEHAHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPQSNFFQEAQMNDASEMNCYHCDLESRRLKYTSFFHNINANALRTMKAMFPESSLDRLLNLVERNHQLACDLEAGGCGKLNHIHHFLSAPPNVFMTVLGWQNTCESVDDITATLAALSTKIDISVLYRGLSPKSTHNLVSVVCYYGQHYHCFAYSRDHGQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFFEAVN 1597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03294 1597 MobiDBLite consensus disorder prediction 292 334 - -
Vifa4g03294 1597 Gene3D Tetratricopeptide repeat domain 67 209 IPR011990 GO:0005515
Vifa4g03294 1597 MobiDBLite consensus disorder prediction 1 52 - -
Vifa4g03294 1597 SUPERFAMILY Cysteine proteinases 1317 1594 IPR038765 -
Vifa4g03294 1597 Gene3D Cysteine proteinases 1316 1432 - -
Vifa4g03294 1597 MobiDBLite consensus disorder prediction 15 52 - -
Vifa4g03294 1597 Coils Coil 785 805 - -
Vifa4g03294 1597 Pfam Ubiquitin carboxyl-terminal hydrolase 1318 1573 IPR001394 GO:0004843|GO:0016579
Vifa4g03294 1597 MobiDBLite consensus disorder prediction 962 1001 - -
Vifa4g03294 1597 Pfam Protein of unknown function (DUF629) 344 872 IPR006865 -
Vifa4g03294 1597 CDD Peptidase_C19 1324 1594 - -
Vifa4g03294 1597 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1317 1596 IPR028889 -
Vifa4g03294 1597 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1596 - -
Vifa4g03294 1597 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Vifa4g03294 1597 MobiDBLite consensus disorder prediction 1164 1192 - -
Vifa4g03294 1597 Coils Coil 196 223 - -
Vifa4g03294 1597 Coils Coil 1042 1075 - -
Vifa4g03294 1597 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
Vifa4g03294 1597 Gene3D Cysteine proteinases 1436 1597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03294 Vifa-Chr4 1031962550 1031974804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03294 65 1594 C2H2 Transcription Factor Family AT3G47890 50.531 0.0 1479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03294 - - gmx:100799759 2217.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03294 4 1031962550 1031974804 Vifa4g03294 4 1031962550 1031974804 ECH