Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03293 ATGGGACACAAAAAGCGATACTCTGCTCCTCGTTCCAAACCTTCGCCGGCGGCTTCTCCGGTGACTCAATCTCCCATCGGCGGAGCCGCCAAAGGTTCTACTTCACCCGACTCCGATGCCACCAACGTTTTCGATCAGAATCTCACTAACCCTAGCAAGAACGAATTAGTTCCTTTTCAATCCGAGGGTTCTGATTTCTCTGCGATTAAGGTAGAATGTGAGCGTGCCCTAACCACGTTTCGTCGTGGTAACCATAATAGGGCGATGAAGCTCATGAAGGAGTTGTGCTTGAAGGAGGAGGGTTCGCCTTACTCGGCGTTTGTTTATCGAATTCATGGATTTATATGTTTCAAAGTGGCTTCGATTATTACTGATTGTAGCGCGAAGCAGCGGCATTTGAAGCATGCTGTTGAATCGGCTAGGAGAGCTGTTGAGCTTTCGCCCAATTCGATTGAGTATGCACATTTTCATGCTACTGTAATATTGGAAGCGGCGACTGAGGCAAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAACCCAAATGATCCTGCTAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGTGTCTAGTTTGGAAGACCGGATATTACATGTGCAGGCTGAGTTGAGGCAGCTGATTCAGAAGTCTAACATAGCTTCATTGTCGTCTTGGATGAAAAATCTGGGTAATGGGGAAGAGAGGTTTCGCTTGATTCCTATAAGGAGGGCTACGGAGGACCCTATGGAGGTTAGGTTAGTTCAGGCTAGAAGGCCAAATGAGATTAAGAAGGTTACCAAGACGCCTGAGGAAAGAAGAAAAGAGATCGAAGTTAGGGTAGCTGCTGCAAGACTGTTGCAGCAGAAGTCAGAGTCACCGCAGGCTCCGAATGAAGGAGAAAGGGATGACAGGGCATTGGATTTGTCTTCAGGGTCTAGTCAGAGGGTAGGTGAGAGGCGAAGGCATATGAGAAAAAATGGCTCTACAGCCGAAAGGAGAAAGTGGGTGCTATCTTATTGGGATTCAGTGAGTATGGATGTGAAGAAGGACTGCCTTAGGATTAAAATATCTGATATCATCTCCCATTTTGGCTCTTCAAAGGAGACTTTGCCAAAAGATGTTTTATCAGAAGCTTTGTTATATGCCGAAGCCAATAAAACATGGAAATTTTGGGTTTGTGGCATTTGTACCGAGATATTTTCCAATCCGGAAGGTCATAGGCAGCATGTTATGCAGGCACACCTTCAGACTCTCTCGCCAAAAATGCAGAGAATTTTGCCTCAACATGTTGACAATGAATGGCTTGAGATGATTCTTAATTGCTCCTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGCTTGACTGTAAAGCTAATCTCAAAGGTTCATCTCTTCCAGAGGATTATCTTGCTCAGGGCTACAATGTTTGTTTTAAAGATTCAACCAGCTCATACCATGAAAAAGAAAGTTTAGGGTACAGTTTTGGTAATTGTACAACAGAAAGAAGCAAGTATTATAAAATTGCTGAAAGTAATGCCAGAGAAGGCATTGAAGACCAACAGTTTATGGCAAATCCTGTTACTGATTGTTGGCCAGTTTCCGATGACAAGGAGCGTGCAAAACTTCTAGAGAAAATCCATGGAGTATTTGAAATGCTTATTAGACACAAATGTATTGCTGCAAGTCATCTTCAGAAGGTCATACAATTTAGTATGGGTGAGATCCAAGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAACTTAAGAAAATTCTCCAATTTCTGCAGGAAATGTCTCATGCTTGTGGGTTGGGTAGATATGCTGATAAAAGTAGTAGTCCCAAGAATGATTTGCATGATATCATCCAAAGTCCTGAGATCAGAGAGAAAATTGTTCTCAATGGAGATGCATCATGCCTTCTCCTGGATGAGTCTCTACTGCTAACACAATTCACTCCTGGTACAGCCCAGGAGTCTGTCTTTGAGGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAGTAATGGTGCTTTTCTTTCCTGGCTATATTCAAGTCGGTCTATTGGGGATCAATTGTCTACATGGATTCAGACCAAAGAAGATAAAATATGCCAAGGGCAAGAAATGGTCCGGACACTTGACAAGGAGTTTTATCAATTACATAGTTTGTGTCAAAAGAAGTGTGACCGTTTAGCTTATGAGGAAGCACTACAGACAATTGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGGGAATGTGGATGAGTTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAAAGGCGGAGGGAAGAGATTGCTGAGAGTGAAAATGAAATGGCGTATACTGGCAGTAGGTTTGAGATGGAATGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATAATCAATATTGCTGTGATGAAACTTATCCTGGCGTGACTTCTCAGATATGTGACTTGGAATCCGGTGAAAATGATGAATGGAGAATGAAGGACTGCTTGCATCAAATGGATGGCTGTGTAGAAATTGCTATTCAAAAACTGAAAGAGCATGCATCTATAGAGATTAGCAAAGCTGACGCTGAGATAATAAGATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGACTTGTTTCTGCCAATGATTATCGAGCAATACTTGTGCCTCTTGTGAAGGTGTACCTAAAGACACTTTTGGAAGATTTGGCTGAGAAATATGCTAGGGAGAAATCTGATGCTGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTGGCAAAGGGGGAAATGAGAGCACGAGACACGTGGAGAAGACAAAGGATAAGAAGAAGAATAAAGATCACAGAAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATGCATCCCTTGCTTCAGTCTACTACTCTTGATTCTGATCTAGTATCGCCTGATAGTGACTTTCAAGATCATGAGATTATTTCCATGAATGATGTTGATTTGGAACACCACGAAGATGATTTTAGACGTAAAATTGAGCTTGAAGAGGAGGAAAAAAAGCTTGAAGAAACCTTGGAACTTCAAAGGAGGATTGAAAATGAGGCCAAACAGAAGCACCTTGCTGAGCAACAGAAGAAATTATCTGGTACATGTGTAGAAGAAGTGTCAGACAAACTTCAAGGTTGTCGATTGAAGCCTGTTGTAGATGGCTCAGATGCACAAGAATATGGAAGACTACCTGTGCAGGAACAGTTGGGAAAGGAGAACGGATGCCCAAACAATCTGGACGTCTTGCTTATTACCGCAGCAAATGGTTCCATGGCGCCGACTAAATCTTTGGCTGATTCAGCTCCCGCCAAAATTAATCACTTGCATCAGTCAAAAGTTAACCAAGCAGATATACCCAATGGAATTGTTCCAGAGAATGGTCTACCTTTGCCTGATCGGCGTGCAGGAAAAAAACATAAGCGGAATAAGAATTCGTCTAAAATGGTTGATGGAAAGTTGGAGTATGTCTCATTGGAGGTAAATGAGAATATTGAGGATAAACATACTGACTATCACATGAGAGAGCAGGCTAAGTTTCATAACAGTCAAGATGCCAAACATTTGTTGGAAAGCAATGGAGTAAAGGTGATGAAAGAATTGCAAGTAGAAGATGAGGAGGAGGAAAGATTCCAAGCCGATCTTAAAATGGCTGTTCGCCAAAGCCTAGACACATATCAAGCACGTGGAAATTTGCCTTTGGTTTCAAGTTTAAGGATGCCACAGAGATCTTCCTCACAGGTAGACCGTTCAGGTCTTGCACCTTTGGAAGATTCAGCTCAGGACGTGAATGGAGCTAGTTTACTTGGTACAGGACTGATGAATGAAGTGGGGGAATATAATTGTTTCCTCAATGTTATTATTCAGTCTTTGTGGCATTTAAGCCGCTTTCGGGTGGAATTTCTTGGCAAATCAAGATCAGAGCATGCTCATGTGGGTAATCCCTGTGTTGTCTGTGCCCTGTATGAAATATTTACCGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAATCTATATCCACAGAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGATGAACTGCTACCATTGTGATCTTGAGTCCAGACGTTTGAAGTATACTTCTTTCTTTCACAATATAAATGCCAATGCCCTTAGGACAATGAAGGCTATGTTTCCTGAGAGCTCCCTTGACAGGCTTTTGAATCTTGTGGAGAGGAACCATCAACTGGCTTGTGATCTAGAGGCCGGGGGATGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAGCTCCGCCCAATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAGTGTTGATGACATAACTGCAACTCTGGCAGCCCTGAGCACCAAGATAGATATCAGCGTCCTTTATCGTGGTTTAAGTCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGTCGTGACCACGGCCAATGGATTATGTATGATGACAAGACTGTTAAGGTAATTGGTGGATGGGCTGATGTTCTTACTATGTGTGAGAGAGGACATCTCCAGCCTCAGGTTCTCTTCTTTGAAGCTGTAAACTAG 4788 0.4279 MGHKKRYSAPRSKPSPAASPVTQSPIGGAAKGSTSPDSDATNVFDQNLTNPSKNELVPFQSEGSDFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEEGSPYSAFVYRIHGFICFKVASIITDCSAKQRHLKHAVESARRAVELSPNSIEYAHFHATVILEAATEAKDYEDVVHECERGLAIENPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLGNGEERFRLIPIRRATEDPMEVRLVQARRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQAPNEGERDDRALDLSSGSSQRVGERRRHMRKNGSTAERRKWVLSYWDSVSMDVKKDCLRIKISDIISHFGSSKETLPKDVLSEALLYAEANKTWKFWVCGICTEIFSNPEGHRQHVMQAHLQTLSPKMQRILPQHVDNEWLEMILNCSWKPLDVSAAVKMLDCKANLKGSSLPEDYLAQGYNVCFKDSTSSYHEKESLGYSFGNCTTERSKYYKIAESNAREGIEDQQFMANPVTDCWPVSDDKERAKLLEKIHGVFEMLIRHKCIAASHLQKVIQFSMGEIQGLAAGSELLKHDVDQTPMCICFLGASQLKKILQFLQEMSHACGLGRYADKSSSPKNDLHDIIQSPEIREKIVLNGDASCLLLDESLLLTQFTPGTAQESVFEDMVTPSSPDGISDSNGAFLSWLYSSRSIGDQLSTWIQTKEDKICQGQEMVRTLDKEFYQLHSLCQKKCDRLAYEEALQTIEDLCLEEGKKRGNVDEFVQRSYESVLKRRREEIAESENEMAYTGSRFEMECISNVLQEAEAMNVNNQYCCDETYPGVTSQICDLESGENDEWRMKDCLHQMDGCVEIAIQKLKEHASIEISKADAEIIRCVSEVQQLELKLGLVSANDYRAILVPLVKVYLKTLLEDLAEKYAREKSDAAGEAFLAELALDSKKIGKGGNESTRHVEKTKDKKKNKDHRKTRDLKATSGSMHPLLQSTTLDSDLVSPDSDFQDHEIISMNDVDLEHHEDDFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVSDKLQGCRLKPVVDGSDAQEYGRLPVQEQLGKENGCPNNLDVLLITAANGSMAPTKSLADSAPAKINHLHQSKVNQADIPNGIVPENGLPLPDRRAGKKHKRNKNSSKMVDGKLEYVSLEVNENIEDKHTDYHMREQAKFHNSQDAKHLLESNGVKVMKELQVEDEEEERFQADLKMAVRQSLDTYQARGNLPLVSSLRMPQRSSSQVDRSGLAPLEDSAQDVNGASLLGTGLMNEVGEYNCFLNVIIQSLWHLSRFRVEFLGKSRSEHAHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPQSNFFQEAQMNDASEMNCYHCDLESRRLKYTSFFHNINANALRTMKAMFPESSLDRLLNLVERNHQLACDLEAGGCGKLNHIHHFLSAPPNVFMTVLGWQNTCESVDDITATLAALSTKIDISVLYRGLSPKSTHNLVSVVCYYGQHYHCFAYSRDHGQWIMYDDKTVKVIGGWADVLTMCERGHLQPQVLFFEAVN 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03293 1595 MobiDBLite consensus disorder prediction 292 334 - -
Vifa4g03293 1595 Gene3D Tetratricopeptide repeat domain 67 209 IPR011990 GO:0005515
Vifa4g03293 1595 MobiDBLite consensus disorder prediction 1 52 - -
Vifa4g03293 1595 MobiDBLite consensus disorder prediction 15 52 - -
Vifa4g03293 1595 MobiDBLite consensus disorder prediction 962 1013 - -
Vifa4g03293 1595 MobiDBLite consensus disorder prediction 1162 1190 - -
Vifa4g03293 1595 Coils Coil 785 805 - -
Vifa4g03293 1595 SUPERFAMILY Cysteine proteinases 1315 1592 IPR038765 -
Vifa4g03293 1595 Pfam Protein of unknown function (DUF629) 344 872 IPR006865 -
Vifa4g03293 1595 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1315 1594 IPR028889 -
Vifa4g03293 1595 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Vifa4g03293 1595 Coils Coil 1040 1073 - -
Vifa4g03293 1595 Gene3D Cysteine proteinases 1314 1430 - -
Vifa4g03293 1595 MobiDBLite consensus disorder prediction 996 1012 - -
Vifa4g03293 1595 Coils Coil 196 223 - -
Vifa4g03293 1595 Gene3D Cysteine proteinases 1434 1595 - -
Vifa4g03293 1595 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1594 - -
Vifa4g03293 1595 CDD Peptidase_C19 1322 1592 - -
Vifa4g03293 1595 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
Vifa4g03293 1595 Pfam Ubiquitin carboxyl-terminal hydrolase 1316 1571 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03293 Vifa-Chr4 1031962550 1031974804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03293 65 1592 C2H2 Transcription Factor Family AT3G47890 50.687 0.0 1482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03293 - - gmx:100799759 2222.2