Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03292 ATGACCCTTAAGGGTGGGACAACACAGGCTTGTGCAGCATGCAAATTCCAGAGAAGAAAGTGCACACCTGAGTGCCTTTTAGCTCCATATTTCCCTGCAGATCAACCTAAGATATTCCTTAATGTTCACAAACTATTTGGAGTTAGCAACATTGTCAAAATACTGAAGATTCTGGAGCCTAGTCAGAAGAAAGCGGCCATGGATTCGATTATCACGCAAGCTAATTATAGAGATAAGTATCCTGTGCATGGATGTTGGGAGGAAATTTGCAGGCTACAATATCAAATATGGATGATGGAAGAAGAACTTCATGCTGTTTATCAACAGCTTGATATTTGTCGACAACAACAGCAGCAACAGTTGCCTCATGATGATGTGACTTCGCAGTTAGAATTGGGAATGGGGCCGCGTTCGTCTAATGCGCTCGCGCTGTTTAATAACACTCCACAGCCACAGAATTACAACAATGTGGCTGCTCCTTTGTCTGTGTCTCAACAGCATTCTTACTCCAACAGCAATAGTTTGGATTATAATAACTCTCCTCTCTATATGGATTCCAAGGATAATGTTACGAATCCTAATTTGTGGCTTCAGTGCCCTTACACTAATAACAATAGCAATTCAATGACAATGCAACCTCATCAGTTGATTGCCTCAGAGTCACAACAACCACTGTCATCTGTTCAACAAGGAGTTGTTGAAGATAATTATGATGAAATGCATTCGTTTTTTGATACAGTTGATGATAGGCAATCATACATTTATTCTAAGGAGGCTTATGAATCAAGTTCAGAAGAGTCATTGAAAGACACAAGAAAGTGCACAGAGCATGTTTCTGAGAATGAACTGAAGAGTGCTGCTGCTTGTTTCAGCCTTACCAGTGTCAACTGA 891 0.4063 MTLKGGTTQACAACKFQRRKCTPECLLAPYFPADQPKIFLNVHKLFGVSNIVKILKILEPSQKKAAMDSIITQANYRDKYPVHGCWEEICRLQYQIWMMEEELHAVYQQLDICRQQQQQQLPHDDVTSQLELGMGPRSSNALALFNNTPQPQNYNNVAAPLSVSQQHSYSNSNSLDYNNSPLYMDSKDNVTNPNLWLQCPYTNNNSNSMTMQPHQLIASESQQPLSSVQQGVVEDNYDEMHSFFDTVDDRQSYIYSKEAYESSSEESLKDTRKCTEHVSENELKSAAACFSLTSVN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03292 296 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 166 - -
Vifa4g03292 296 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Vifa4g03292 296 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03292 Vifa-Chr4 1031159325 1031160920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03292 1 259 AS2 family AT3G47870 42.345 3.29e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g03292 LOB 8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03292 - - lang:109357116 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03292 4 1031159325 1031160920 Vifa4g03292 4 1031159325 1031160920 ECH