Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03290 ATGGGAGGCGGTGATCTTTATTTGTCCGACATGGAGGAAGAGGAGGCGGAGGCGGAGGAGGAGGACAACGGTGTCAAGCTTCGCGTGTTTTCCGAAACGGCGTCGTTGGAAGATGATCCGGAGAGGTGCCGAGAAATAATCGTGACGCTTCAACAGAGGTTTCAGTTTGTTAGGTTAGCTCTTAAGTATCATTGCGCTGCAGAAGATGAGATTATCTTCCATGCTCTCGATGCGCATGTCAAAAATGTTGTATGTACATATTCCCTTGAACACAACAGCGCCGATGGCCTGTTTGTTTCTATCTTACACTTCTTGGATGAGCTTATGGGCTCTAGTCACAATATTTCCAACCTGTTCCGAGAACTTGTCTACTGCATTGATATCTTGCAAACCTCCATCTACCAACATATGTTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATCCAAAATTTGTCTACTAAAGAACAAGCCTCGCTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTACTGGAAGAAGTTTTGCCATGGATGTTATCCTTTCTTTCAGCAGATAAACAAGCAGAAGTTACTCAGTGTTTTAATGAAATTGCACCAATGGAAAGAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTGGAAGCAACAAACAAACCTTCTCTGGGACATATTTTCACAGTGAGGAGCTTCAAGGTTCTCATGGATTCCAACATATAGAAAAATCTTTTGTGCAGAGTTCTTGCAATAGGAACTACAAAGAAATTTCAAATGAGATGGAAGTGTATGACAAAGAAACAGAAGATGGGGTCAACCAGGTTAAGGTTCTCCATCTTTGGCATAATGCCATAAGGAAAGATTTGAAAGAAATCCAGCAAGAGCTTTATCTAATAAGAAATTCCGGCTGTTCTCAAAATTTAGACTCGATACTTATCCAGCTAAAATTCTTGGCCGATGTCCTCATCTTCTACAGCAATGCTCTGAAAAAATTCTTTCATCCTATACTGAACAAACTGGCCCGTGGCCGATTTTCCAAGTCTACTGAATATTTACTTGGAGAAAGTCACATTGAGGATATACAACAGTTGCTACTTTATAACTCAGAAAGCGAAATGCCTGTGACCAAATTTGTAGAGAAGCTTTGCGGAAAACTTGAATTATTTGTATCAGCAGTCAACGAACAATTTTCTTTTCAAGAAATTGAGGTGTTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAATTCACTTGTCTGAAAAAGAATCCAGGTAAAACCTCAATTGAGAAGTTTCGACAGGGTTTGCAGTATATGTTCAAAAGAAGACACTCTTTTTCATCTGAGAAAATGAAGGAAACTAGTGGGTTTTCATTCTTAAGTTCTGACAAGCAGCCACATAAAAATTGTGCCAAGAATTGTCTGTCCAATTCATCATCTTCTGGATCCAAAAATGTGAACAAGTATGAGACACCATACTCCACAGGAATTAATTTGCACATATTTTTCCCTGACACAGCTATGAAGTTAAACCAGCATCCAAGGTTTCATGCAGCAAATTCGTCTTCTGTTTCCTTTCTTAATGATCCAAAACCAATTGACCTGATATTTTTCTTTCACAAGGCTATTAAGAAAGACTTGGATTACCTAGTTCTTGGCTCAGCTAAGTTAGAGGGACATGATGAGTTTATAGATTTCCAAAAACGGTTCCATCTCATATGTTTTCTTCATCAAATCCATAGTGATGCGGAGGATGAGATAGTTTTTCCTGCCTTGGAGGCAATAGGTCAGCTTAAAAACATTAGCCTTGCCTACACCTTCGATCATAAACATGAAGTTGAGCACTTTGCTAAAATATCTCGCATTCTTGACAGGATGTCTGAATTACATCCTTTGGTTTCTACTACTGATTCAAAGATAAGGGAGAAGAGAATGCTAAGGCGTGATCGTTTAATCAAGAAGCTGCAAGAAATGTGCAAATCGATGCACAAGTTACTTTCTGATCATATAAACCGTGAGGAAATAGAACTTTGGCCTATAATTAGAGAATTCTTCTCAAACCGAGAGCAAGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGTGCAGAAATATTACAAGATATGATACCATGGGTGATGGCATCTTTAACACAGGAAGAGCAGCATATTTTAATGTTCTTATGGTCCATGGTTACTAAGAATACAATGTTTGACGAGTGGTTAAGTGAATGGTGGAATGGGTACAGTTTAGCTAAGGAAGCAGATGAATCAAATGATGCCCCTCTACAGAATGTTGAACCACTAGAAGTTATATCCAAATATTTGTCTGAGGAAGTTCTTAATGAATTACAAGAAGAATCATCGGCCAACGAAAGCATAAGTTTTTGGCAGAAAGATCTTATTGGCAATAATTCTGCGCTCTCCAACTCCAATGTTGATGACAACGTTAAGGTTCATAATGCAGCACAAAATTATAGTCAATGTTCAAAATGCACAAATCAATTTCATGATATTAAGAAACATACCTGCAATGAAGTAAAACCAGTGGGCATTTTGGCAAGTCAGTCTTTTCAACATTTTGATTTGGACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAAGATGATCTGGAGAGGGTGATAAGAAGGGTGTCTCGTGACTCTTCCCTAGATTCTCAGAAAAAGTCATACATAATACAGAGTCTACTTATGAGCCGTTGGATTATTAGTCAGAAGATTTCTTCTATGGAAGTCAATATCAAAAGCGATGGGCTGGAATTCCCTGGGAAACATCCATCTTACAAGGATCCTCTCAAACAAATCTATGGCTGCAAACACTACAAGCGGAACTGTAAGCTTTTTGCTCCCTGTTGCAATGAACTTCATGCTTGCATACATTGCCATGATGAGGTATCAGATCATGTAATTGATAGAAAATCTATTACAATGATGATGTGTATGAAGTGCTTGGTGATTCAACCAATCAATGCCACATGCTCATCAGTTTCTTGCCGTAATTTATCCATGGCAAAATATTACTGCAAGATCTGCAAATTGTTTGAAGATGAAAGGAAAATTTACCACTGTCCCTTTTGTAACTTATGCCGACTTGGAAAGGGTTTGGGTGTTGACTTTTTTCATTGCATGAATTGCAATGCTTGTTTGTCCCGTTCTCTTATGATACATACATGCAGAGAAAAATCTTTAGAGGAAAACTGTCCGATTTGTCATGAATATATCTTCACATCCTGCTCTCCGGTAAAAGCCCTTCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACTTGTTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGAATGCCTTGCAGGTTTATTTTAGGATGCTAGATGCACTATTGGCTGAGGAGAAAATGCCTGACGAGTTTTCCGGTCAAATCCAGGTTATTTTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCATAAATGCATTTCTTGTGGTTCCTACAACACTAGAGTTTTATGA 3561 0.3881 MGGGDLYLSDMEEEEAEAEEEDNGVKLRVFSETASLEDDPERCREIIVTLQQRFQFVRLALKYHCAAEDEIIFHALDAHVKNVVCTYSLEHNSADGLFVSILHFLDELMGSSHNISNLFRELVYCIDILQTSIYQHMLKEEEQVFPLLIQNLSTKEQASLVWQFICSVPIMLLEEVLPWMLSFLSADKQAEVTQCFNEIAPMERALQEVLVSWLGSNKQTFSGTYFHSEELQGSHGFQHIEKSFVQSSCNRNYKEISNEMEVYDKETEDGVNQVKVLHLWHNAIRKDLKEIQQELYLIRNSGCSQNLDSILIQLKFLADVLIFYSNALKKFFHPILNKLARGRFSKSTEYLLGESHIEDIQQLLLYNSESEMPVTKFVEKLCGKLELFVSAVNEQFSFQEIEVFPIFRKNCRNGMQFTCLKKNPGKTSIEKFRQGLQYMFKRRHSFSSEKMKETSGFSFLSSDKQPHKNCAKNCLSNSSSSGSKNVNKYETPYSTGINLHIFFPDTAMKLNQHPRFHAANSSSVSFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAKLEGHDEFIDFQKRFHLICFLHQIHSDAEDEIVFPALEAIGQLKNISLAYTFDHKHEVEHFAKISRILDRMSELHPLVSTTDSKIREKRMLRRDRLIKKLQEMCKSMHKLLSDHINREEIELWPIIREFFSNREQGKIIGCMLGRISAEILQDMIPWVMASLTQEEQHILMFLWSMVTKNTMFDEWLSEWWNGYSLAKEADESNDAPLQNVEPLEVISKYLSEEVLNELQEESSANESISFWQKDLIGNNSALSNSNVDDNVKVHNAAQNYSQCSKCTNQFHDIKKHTCNEVKPVGILASQSFQHFDLDKSGHYDRLLKLSQDDLERVIRRVSRDSSLDSQKKSYIIQSLLMSRWIISQKISSMEVNIKSDGLEFPGKHPSYKDPLKQIYGCKHYKRNCKLFAPCCNELHACIHCHDEVSDHVIDRKSITMMMCMKCLVIQPINATCSSVSCRNLSMAKYYCKICKLFEDERKIYHCPFCNLCRLGKGLGVDFFHCMNCNACLSRSLMIHTCREKSLEENCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQNALQVYFRMLDALLAEEKMPDEFSGQIQVILCNDCEKKGAAPFHWLYHKCISCGSYNTRVL 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03290 1186 FunFam Zinc finger protein-related isoform 1 1071 1120 - -
Vifa4g03290 1186 Gene3D nmb1532 protein domain like 271 416 - -
Vifa4g03290 1186 Gene3D nmb1532 protein domain like 528 700 - -
Vifa4g03290 1186 Gene3D nmb1532 protein domain like 37 166 - -
Vifa4g03290 1186 ProSiteProfiles Zinc finger CTCHY-type profile. 1012 1075 IPR017921 -
Vifa4g03290 1186 ProSiteProfiles Zinc finger RING-type profile. 1076 1118 IPR001841 -
Vifa4g03290 1186 CDD Hr-like 534 679 - -
Vifa4g03290 1186 Pfam Zinc-ribbon 1129 1184 IPR039512 -
Vifa4g03290 1186 SUPERFAMILY Zinc hairpin stack 1013 1067 IPR037275 -
Vifa4g03290 1186 Coils Coil 8 28 - -
Vifa4g03290 1186 SMART ring_2 1076 1117 IPR001841 -
Vifa4g03290 1186 ProSiteProfiles Zinc finger CHY-type profile. 940 1009 IPR008913 GO:0008270
Vifa4g03290 1186 CDD Hr-like 28 146 - -
Vifa4g03290 1186 Gene3D - 1151 1186 - -
Vifa4g03290 1186 Pfam CHY zinc finger 947 1022 IPR008913 GO:0008270
Vifa4g03290 1186 CDD RING-H2_Pirh2-like 1075 1118 - -
Vifa4g03290 1186 MobiDBLite consensus disorder prediction 1 23 - -
Vifa4g03290 1186 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 576 1186 - -
Vifa4g03290 1186 SUPERFAMILY RING/U-box 1066 1124 - -
Vifa4g03290 1186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1069 1120 IPR013083 -
Vifa4g03290 1186 SUPERFAMILY CHY zinc finger-like 938 1004 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03290 Vifa-Chr4 1031102981 1031110589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03290 525 750 C2H2 Transcription Factor Family AT3G18290 25.431 1.54e-14 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03290 K16276 - gmx:100802706 1771.9